Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tug1 taurine upregulated gene 1 [ Mus musculus (house mouse) ]

    Gene ID: 544752, updated on 11-Jul-2021

    Summary

    Official Symbol
    Tug1provided by MGI
    Official Full Name
    taurine upregulated gene 1provided by MGI
    Primary source
    MGI:MGI:2144114
    See related
    Ensembl:ENSMUSG00000056579
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI316828
    Expression
    Ubiquitous expression in whole brain E14.5 (RPKM 12.7), placenta adult (RPKM 11.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tug1 in Genome Data Viewer
    Location:
    11; 11 A1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (3589785..3598814, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (3639785..3648814, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (3539797..3548811, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein 1 light chain 3 copy 5 pseudogene Neighboring gene predicted gene 11951 Neighboring gene microrchidia 2A Neighboring gene nucleolar and spindle associated protein 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002321.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (a, also known as TUG1a) represents the shortest transcript.
      Source sequence(s)
      AL691413, BC057363, DQ517434
      Related
      ENSMUST00000144852.2
    2. NR_002322.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (b, also known as TUG1c) lacks an exon at the 5' end and contains alternate segments at both ends, resulting in a longer transcript, compared to variant a.
      Source sequence(s)
      AK048213, DQ517434
      Related
      ENSMUST00000132077.4
    3. NR_110490.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (c) differs at the 5' end, resulting in a longer transcript, compared to variant 1.
      Source sequence(s)
      AK165129, DQ517434
      Related
      ENSMUST00000153313.9

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      3589785..3598814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center