Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Lypd6b LY6/PLAUR domain containing 6B [ Mus musculus (house mouse) ]

    Gene ID: 71897, updated on 23-Jun-2021

    Summary

    Official Symbol
    Lypd6bprovided by MGI
    Official Full Name
    LY6/PLAUR domain containing 6Bprovided by MGI
    Primary source
    MGI:MGI:1919147
    See related
    Ensembl:ENSMUSG00000026765
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW049525; 2310010M24Rik
    Expression
    Broad expression in CNS E18 (RPKM 3.8), cortex adult (RPKM 2.3) and 15 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lypd6b in Genome Data Viewer
    Location:
    2; 2 C1.1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (49677380..49838861)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (49787340..49948849)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (49643206..49804366)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene enhancer of polycomb homolog 2 Neighboring gene kinesin family member 5C Neighboring gene predicted gene, 46738 Neighboring gene LY6/PLAUR domain containing 6 Neighboring gene methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria Neighboring gene predicted gene 13483

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC143485

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables acetylcholine receptor regulator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables acetylcholine receptor regulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in anchored component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ly6/PLAUR domain-containing protein 6B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001379381.1NP_001366310.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    2. NM_001379382.1NP_001366311.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    3. NM_001379383.1NP_001366312.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    4. NM_001379384.1NP_001366313.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    5. NM_001379385.1NP_001366314.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    6. NM_001379386.1NP_001366315.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    7. NM_001379387.1NP_001366316.1  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    8. NM_027990.4NP_082266.2  ly6/PLAUR domain-containing protein 6B precursor

      Status: VALIDATED

      Source sequence(s)
      AL806528, AL929069, BX813318
      Consensus CDS
      CCDS16025.1
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      49677380..49838861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006498352.5XP_006498415.1  ly6/PLAUR domain-containing protein 6B isoform X1

      See identical proteins and their annotated locations for XP_006498415.1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Conserved Domains (1) summary
      pfam16975
      Location:59163
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    2. XM_006498350.5XP_006498413.1  ly6/PLAUR domain-containing protein 6B isoform X1

      See identical proteins and their annotated locations for XP_006498413.1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Conserved Domains (1) summary
      pfam16975
      Location:59163
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    3. XM_006498351.5XP_006498414.1  ly6/PLAUR domain-containing protein 6B isoform X1

      See identical proteins and their annotated locations for XP_006498414.1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Conserved Domains (1) summary
      pfam16975
      Location:59163
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    4. XM_006498353.5XP_006498416.1  ly6/PLAUR domain-containing protein 6B isoform X1

      See identical proteins and their annotated locations for XP_006498416.1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Conserved Domains (1) summary
      pfam16975
      Location:59163
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    5. XM_006498354.5XP_006498417.1  ly6/PLAUR domain-containing protein 6B isoform X1

      See identical proteins and their annotated locations for XP_006498417.1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Conserved Domains (1) summary
      pfam16975
      Location:59163
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    6. XM_017319267.1XP_017174756.1  ly6/PLAUR domain-containing protein 6B isoform X1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Related
      ENSMUSP00000028103.7, ENSMUST00000028103.13
      Conserved Domains (1) summary
      pfam16975
      Location:59163
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    7. XM_006498359.5XP_006498422.1  ly6/PLAUR domain-containing protein 6B isoform X2

      See identical proteins and their annotated locations for XP_006498422.1

      UniProtKB/Swiss-Prot
      Q9D7F2
      Conserved Domains (1) summary
      pfam16975
      Location:40144
      UPAR_LY6_2; Ly6/PLAUR domain-containing protein 6, Lypd6
    Support Center