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    Spmip3 sperm microtubule inner protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 69428, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Spmip3provided by MGI
    Official Full Name
    sperm microtubule inner protein 3provided by MGI
    Primary source
    MGI:MGI:1916678
    See related
    Ensembl:ENSMUSG00000015962 AllianceGenome:MGI:1916678
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700016C15Rik
    Summary
    Orthologous to human C1orf100 (chromosome 1 open reading frame 100). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 25.5) See more
    Orthologs
    human all
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    Genomic context

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    Location:
    1 H4; 1 82.8 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (177555704..177580875)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (177728137..177753309)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30013 Neighboring gene microRNA 12179 Neighboring gene RIKEN cDNA 2310043L19 gene Neighboring gene STARR-positive B cell enhancer ABC_E11111 Neighboring gene STARR-seq mESC enhancer starr_03127 Neighboring gene STARR-positive B cell enhancer ABC_E9190 Neighboring gene STARR-seq mESC enhancer starr_03128 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:179630726-179631007 Neighboring gene STARR-positive B cell enhancer ABC_E5863 Neighboring gene STARR-seq mESC enhancer starr_03129 Neighboring gene predicted gene, 30115 Neighboring gene STARR-seq mESC enhancer starr_03132 Neighboring gene STARR-seq mESC enhancer starr_03133 Neighboring gene STARR-positive B cell enhancer ABC_E4395 Neighboring gene STARR-positive B cell enhancer ABC_E632 Neighboring gene adenylosuccinate synthase 2 Neighboring gene STARR-seq mESC enhancer starr_03135 Neighboring gene ribosomal protein S8 pseudogene Neighboring gene cation channel sperm associated auxiliary subunit epsilon 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    protein SPMIP3
    Names
    sperm associated microtubule inner protein 3
    uncharacterized protein C1orf100 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027077.2 → NP_081353.1  protein SPMIP3

      See identical proteins and their annotated locations for NP_081353.1

      Status: PROVISIONAL

      Source sequence(s)
      AK006014
      Consensus CDS
      CCDS48462.1
      UniProtKB/Swiss-Prot
      Q9DAA7
      Related
      ENSMUSP00000016106.6, ENSMUST00000016106.6
      Conserved Domains (1) summary
      pfam17670
      Location:1 → 142
      DUF5530; Family of unknown function (DUF5530)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      177555704..177580875
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006496976.5 → XP_006497039.1  protein SPMIP3 isoform X1

      See identical proteins and their annotated locations for XP_006497039.1

      UniProtKB/Swiss-Prot
      Q9DAA7
      Conserved Domains (1) summary
      pfam17670
      Location:1 → 142
      DUF5530; Family of unknown function (DUF5530)

    2. XM_006496978.5 → XP_006497041.1  protein SPMIP3 isoform X2

      Conserved Domains (1) summary
      pfam17670
      Location:1 → 50
      DUF5530; Family of unknown function (DUF5530)

    RNA

    1. XR_373615.4 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9DAA7.1 GenPept UniProtKB/Swiss-Prot:Q9DAA7

    Gene LinkOut

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