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    1700036A12Rik RIKEN cDNA 1700036A12 gene [ Mus musculus (house mouse) ]

    Gene ID: 100040447, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1700036A12Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700036A12 geneprovided by MGI
    Primary source
    MGI:MGI:1920548
    See related
    AllianceGenome:MGI:1920548
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    9 B; 9 32.89 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (60675191..60677558)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (60767909..60770276)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene leucine rich repeat containing 49 Neighboring gene STARR-seq mESC enhancer starr_24323 Neighboring gene La ribonucleoprotein 6, translational regulator Neighboring gene STARR-seq mESC enhancer starr_24324 Neighboring gene STARR-seq mESC enhancer starr_24325 Neighboring gene STARR-seq mESC enhancer starr_24327 Neighboring gene uveal autoantigen with coiled-coil domains and ankyrin repeats Neighboring gene predicted gene 9869 Neighboring gene STARR-positive B cell enhancer ABC_E2892 Neighboring gene predicted gene, 33643

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      60675191..60677558
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001779186.1 RNA Sequence

    2. XR_001779187.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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