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    4930568D16Rik RIKEN cDNA 4930568D16 gene [ Mus musculus (house mouse) ]

    Gene ID: 75859, updated on 11-Apr-2024

    Summary

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    Official Symbol
    4930568D16Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930568D16 geneprovided by MGI
    Primary source
    MGI:MGI:1923109
    See related
    Ensembl:ENSMUSG00000026882 AllianceGenome:MGI:1923109
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ggta1l1
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be involved in lipid glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and vesicle. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 2.5) See more
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    Genomic context

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    Location:
    2 B; 2 23.57 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (35244218..35257746, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (35354218..35367729, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene stomatin Neighboring gene STARR-positive B cell enhancer mm9_chr2:35192389-35192690 Neighboring gene glyoxalase 1, pseudogene Neighboring gene RIKEN cDNA 4930402F06 gene Neighboring gene predicted gene, 39797 Neighboring gene glycoprotein galactosyltransferase alpha 1, 3 Neighboring gene STARR-positive B cell enhancer ABC_E9510 Neighboring gene STARR-positive B cell enhancer mm9_chr2:35316734-35317035 Neighboring gene STARR-positive B cell enhancer ABC_E2034

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. CRISPR/Cas9-mediated genome-edited mice reveal 10 testis-enriched genes are dispensable for male fecundity. Park S, et al. Biol Reprod, 2020 Aug 4. PMID 32561905, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables N-acetyllactosaminide 3-alpha-galactosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables glycosyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in lipid glycosylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1
    NP_083739.1
    XP_006498459.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029463.2 → NP_083739.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 precursor

      See identical proteins and their annotated locations for NP_083739.1

      Status: VALIDATED

      Source sequence(s)
      AL773523, AL929199
      Consensus CDS
      CCDS50575.1
      UniProtKB/Swiss-Prot
      A2AUQ7, Q9D4R9
      Related
      ENSMUSP00000028243.2, ENSMUST00000028243.2
      Conserved Domains (1) summary
      cl11394
      Location:57 → 319
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      35244218..35257746 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006498396.3 → XP_006498459.1  N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 isoform X1

      See identical proteins and their annotated locations for XP_006498459.1

      UniProtKB/Swiss-Prot
      A2AUQ7, Q9D4R9
      Conserved Domains (1) summary
      cl11394
      Location:57 → 319
      Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2AUQ7.1 GenPept UniProtKB/Swiss-Prot:A2AUQ7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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