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    Sypl2 synaptophysin-like 2 [ Mus musculus (house mouse) ]

    Gene ID: 17306, updated on 23-Jun-2021

    Summary

    Official Symbol
    Sypl2provided by MGI
    Official Full Name
    synaptophysin-like 2provided by MGI
    Primary source
    MGI:MGI:1328311
    See related
    Ensembl:ENSMUSG00000027887
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mg29; AI552439
    Expression
    Biased expression in mammary gland adult (RPKM 12.7), kidney adult (RPKM 10.8) and 11 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Sypl2 in Genome Data Viewer
    Location:
    3; 3 F2.3- F3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108119582..108133915, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108210410..108226989, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (108015184..108029517, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene adhesion molecule with Ig like domain 1 Neighboring gene cytochrome b-561 domain containing 1 Neighboring gene ataxin 7-like 2 Neighboring gene SIVA1, apoptosis-inducing factor pseudogene Neighboring gene proteasome subunit alpha 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within T-tubule organization IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    acts_upstream_of_or_within cellular calcium ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within heart development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in synaptic vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    synaptophysin-like protein 2
    Names
    mitsugumin 29

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_008596.1NP_032622.1  synaptophysin-like protein 2

      See identical proteins and their annotated locations for NP_032622.1

      Status: PROVISIONAL

      Source sequence(s)
      AB010140
      Consensus CDS
      CCDS57253.1
      UniProtKB/Swiss-Prot
      O89104
      Related
      ENSMUSP00000116756.3, ENSMUST00000141387.4
      Conserved Domains (1) summary
      pfam01284
      Location:30232
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      108119582..108133915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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