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    0610030E20Rik RIKEN cDNA 0610030E20 gene [ Mus musculus (house mouse) ]

    Gene ID: 68364, updated on 5-Mar-2024

    Summary

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    Official Symbol
    0610030E20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 0610030E20 geneprovided by MGI
    Primary source
    MGI:MGI:1915614
    See related
    Ensembl:ENSMUSG00000058706 AllianceGenome:MGI:1915614
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1500031N04Rik; 2810411C16Rik
    Summary
    Orthologous to human C2orf68 (chromosome 2 open reading frame 68). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in bladder adult (RPKM 9.3), thymus adult (RPKM 9.1) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    6 C1; 6 32.27 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (72324017..72330145)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (72347034..72353162)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene surfactant associated protein B Neighboring gene STARR-seq mESC enhancer starr_16282 Neighboring gene ubiquitin specific peptidase 39 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:72295216-72295399 Neighboring gene transmembrane protein 150A Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:72312603-72312712 Neighboring gene ring finger protein 181 Neighboring gene vesicle-associated membrane protein 5 Neighboring gene predicted gene, 52494

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0561 protein C2orf68 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026696.1 → NP_080972.1  UPF0561 protein C2orf68 homolog

      See identical proteins and their annotated locations for NP_080972.1

      Status: VALIDATED

      Source sequence(s)
      AC116115, BB844069, BC066053, BE945833
      Consensus CDS
      CCDS51808.1
      UniProtKB/Swiss-Prot
      Q149G0, Q9DCK6
      Related
      ENSMUSP00000076957.4, ENSMUST00000077783.5
      Conserved Domains (1) summary
      pfam10573
      Location:4 → 126
      UPF0561; uncharacterized protein family UPF0561

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      72324017..72330145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006506534.5 → XP_006506597.1  UPF0561 protein C2orf68 homolog isoform X1

      See identical proteins and their annotated locations for XP_006506597.1

      Conserved Domains (1) summary
      pfam10573
      Location:116 → 211
      UPF0561; Uncharacterized protein family UPF0561
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q149G0.1 GenPept UniProtKB/Swiss-Prot:Q149G0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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