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    Znf41-ps ZNF41, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 70005, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Znf41-psprovided by MGI
    Official Full Name
    ZNF41, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:1917255
    See related
    AllianceGenome:MGI:1917255
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700029I01Rik
    Expression
    Broad expression in testis adult (RPKM 5.4), bladder adult (RPKM 4.4) and 17 other tissues See more
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    Genomic context

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    Location:
    4 E1; 4 78.26 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145516085..145558548)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (145789515..145831978)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 15 Neighboring gene protein phosphatase 2, regulatory subunit B', alpha pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145357281-145357581 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145371246-145371546 Neighboring gene tousled-like kinase 2 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr4:145375889-145376189 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145380924-145381225 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145411896-145412197 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145414700-145415001 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145418046-145418347 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene 60S acidic ribosomal protein P1 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A systems approach reveals that the myogenesis genome network is regulated by the transcriptional repressor RP58. Yokoyama S, et al. Dev Cell, 2009 Dec. PMID 20059953, Free PMC Article
    2. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, et al. Science, 2004 Dec 24. PMID 15618518
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040355.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL929465, BC096621

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      145516085..145558548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_027285.3: Suppressed sequence

      Description
      NM_027285.3: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein Strain
    Heading Accession and Version

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