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    Rnf222 ring finger protein 222 [ Mus musculus (house mouse) ]

    Gene ID: 320040, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Rnf222provided by MGI
    Official Full Name
    ring finger protein 222provided by MGI
    Primary source
    MGI:MGI:2443227
    See related
    Ensembl:ENSMUSG00000046490 AllianceGenome:MGI:2443227
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9930039A11Rik
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RNF222 (ring finger protein 222). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Rnf222 in Genome Data Viewer
    Location:
    11 B3; 11 42.16 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (68772947..68786605)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (68882121..68895779)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene myosin, heavy polypeptide 10, non-muscle Neighboring gene predicted gene, 53684 Neighboring gene predicted gene, 53685 Neighboring gene nudE neurodevelopment protein 1 like 1 Neighboring gene STARR-positive B cell enhancer ABC_E5235 Neighboring gene STARR-seq mESC enhancer starr_29823 Neighboring gene STARR-seq mESC enhancer starr_29824 Neighboring gene STARR-positive B cell enhancer ABC_E6999 Neighboring gene predicted gene, 22608 Neighboring gene ribosomal protein L26

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Ex vivo Quantitative Proteomic Analysis of Serotonin Transporter Interactome: Network Impact of the SERT Ala56 Coding Variant. Quinlan MA, et al. Front Mol Neurosci, 2020. PMID 32581705, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RING finger protein 222

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177060.3 → NP_796034.2  RING finger protein 222

      See identical proteins and their annotated locations for NP_796034.2

      Status: VALIDATED

      Source sequence(s)
      AK028294, AK037028
      Consensus CDS
      CCDS24871.1
      UniProtKB/Swiss-Prot
      B1ARA2, Q8CEF8
      Related
      ENSMUSP00000067364.5, ENSMUST00000065213.5
      Conserved Domains (1) summary
      cd16564
      Location:13 → 65
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      68772947..68786605
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533540.3 → XP_006533603.1  RING finger protein 222 isoform X1

      See identical proteins and their annotated locations for XP_006533603.1

      UniProtKB/Swiss-Prot
      B1ARA2, Q8CEF8
      Conserved Domains (1) summary
      cd16564
      Location:13 → 65
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

    2. XM_006533542.4 → XP_006533605.1  RING finger protein 222 isoform X1

      See identical proteins and their annotated locations for XP_006533605.1

      UniProtKB/Swiss-Prot
      B1ARA2, Q8CEF8
      Conserved Domains (1) summary
      cd16564
      Location:13 → 65
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins

    3. XM_006533543.3 → XP_006533606.1  RING finger protein 222 isoform X1

      See identical proteins and their annotated locations for XP_006533606.1

      UniProtKB/Swiss-Prot
      B1ARA2, Q8CEF8
      Conserved Domains (1) summary
      cd16564
      Location:13 → 65
      RING-HC_RNF222; RING finger, HC subclass, found in RING finger protein 222 (RNF222) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CEF8.2 GenPept UniProtKB/Swiss-Prot:Q8CEF8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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