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    Ccdc102a coiled-coil domain containing 102A [ Mus musculus (house mouse) ]

    Gene ID: 234582, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ccdc102aprovided by MGI
    Official Full Name
    coiled-coil domain containing 102Aprovided by MGI
    Primary source
    MGI:MGI:2686927
    See related
    Ensembl:ENSMUSG00000063605 AllianceGenome:MGI:2686927
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm586
    Summary
    Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in limb E14.5 (RPKM 18.3), ovary adult (RPKM 17.2) and 23 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 C5; 8 46.99 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (95629497..95644726, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (94902869..94918098, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cytokine induced apoptosis inhibitor 1 Neighboring gene STARR-positive B cell enhancer ABC_E10518 Neighboring gene coenzyme Q9 Neighboring gene polymerase (RNA) II (DNA directed) polypeptide C Neighboring gene docking protein 4 Neighboring gene STARR-positive B cell enhancer mm9_chr8:97441323-97441623 Neighboring gene adhesion G protein-coupled receptor G5 Neighboring gene STARR-positive B cell enhancer ABC_E8258 Neighboring gene STARR-positive B cell enhancer ABC_E3795 Neighboring gene predicted gene, 30968 Neighboring gene adhesion G protein-coupled receptor G1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A male with unilateral microphthalmia reveals a role for TMX3 in eye development. Chao R, et al. PLoS One, 2010 May 11. PMID 20485507, Free PMC Article
    2. Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways. Sang L, et al. Cell, 2011 May 13. PMID 21565611, Free PMC Article
    3. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 102A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033533.3 → NP_001028705.2  coiled-coil domain-containing protein 102A

      See identical proteins and their annotated locations for NP_001028705.2

      Status: VALIDATED

      Source sequence(s)
      BB613877, BC107374, BF020220
      Consensus CDS
      CCDS22551.1
      UniProtKB/Swiss-Prot
      A0AUL1, Q3B7Y4, Q3TMW1
      UniProtKB/TrEMBL
      A4FUJ5, B2RTE5
      Related
      ENSMUSP00000077107.6, ENSMUST00000077955.6
      Conserved Domains (1) summary
      COG1196
      Location:242 → 516
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      95629497..95644726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011248354.4 → XP_011246656.1  coiled-coil domain-containing protein 102A isoform X1

      See identical proteins and their annotated locations for XP_011246656.1

      UniProtKB/Swiss-Prot
      A0AUL1, Q3B7Y4, Q3TMW1
      UniProtKB/TrEMBL
      A4FUJ5, B2RTE5
      Conserved Domains (1) summary
      COG1196
      Location:242 → 516
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3TMW1.2 GenPept UniProtKB/Swiss-Prot:Q3TMW1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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