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    Rbm46 RNA binding motif protein 46 [ Mus musculus (house mouse) ]

    Gene ID: 633285, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rbm46provided by MGI
    Official Full Name
    RNA binding motif protein 46provided by MGI
    Primary source
    MGI:MGI:3645057
    See related
    Ensembl:ENSMUSG00000033882
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm761; EG633285
    Expression
    Biased expression in testis adult (RPKM 4.6), placenta adult (RPKM 1.1) and 4 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Rbm46 in Genome Data Viewer
    Location:
    3; 3 E3
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (82743828..82783814, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (82836521..82876512, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (82641155..82680405, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene neuropeptide Y receptor Y2 Neighboring gene predicted gene, 29999 Neighboring gene RNA binding motif protein 46, opposite strand Neighboring gene lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase) Neighboring gene predicted gene, 30097 Neighboring gene fibrinogen gamma chain

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    probable RNA-binding protein 46

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001146328.2NP_001139800.1  probable RNA-binding protein 46 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AC102130, AC158935
      Consensus CDS
      CCDS50938.1
      UniProtKB/Swiss-Prot
      P86049
      Related
      ENSMUSP00000045511.7, ENSMUST00000048647.14
      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    2. NM_001277170.1NP_001264099.1  probable RNA-binding protein 46

      Status: VALIDATED

      Source sequence(s)
      AC102130, AC158935, AV254043, CJ047211
      Consensus CDS
      CCDS71255.1
      UniProtKB/TrEMBL
      S4R1Y9
      Related
      ENSMUSP00000138429.2, ENSMUST00000182818.3
      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      82743828..82783814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030252743.2XP_030108603.1  probable RNA-binding protein 46 isoform X2

      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    2. XM_036163209.1XP_036019102.1  probable RNA-binding protein 46 isoform X2

      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    3. XM_006501850.4XP_006501913.1  probable RNA-binding protein 46 isoform X1

      See identical proteins and their annotated locations for XP_006501913.1

      UniProtKB/Swiss-Prot
      P86049
      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    4. XM_006501851.3XP_006501914.1  probable RNA-binding protein 46 isoform X1

      See identical proteins and their annotated locations for XP_006501914.1

      UniProtKB/Swiss-Prot
      P86049
      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
    5. XM_011240188.3XP_011238490.1  probable RNA-binding protein 46 isoform X1

      See identical proteins and their annotated locations for XP_011238490.1

      UniProtKB/Swiss-Prot
      P86049
      Conserved Domains (1) summary
      TIGR01648
      Location:5464
      hnRNP-R-Q; heterogeneous nuclear ribonucleoprotein R, Q family
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