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    E030030I06Rik RIKEN cDNA E030030I06 gene [ Mus musculus (house mouse) ]

    Gene ID: 319887, updated on 8-Feb-2024

    Summary

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    Official Symbol
    E030030I06Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E030030I06 geneprovided by MGI
    Primary source
    MGI:MGI:2442914
    See related
    AllianceGenome:MGI:2442914
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in central nervous system; ganglia; and neural retina. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    10 A3; 10 9.88 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (21988949..22025169, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (22113050..22149270, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene SUMO/sentrin specific peptidase 2-like 2B Neighboring gene predicted gene, 2539 Neighboring gene olfactory receptor 2G6-like Neighboring gene aldo-keto reductase family 1, member B3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26015 Neighboring gene predicted gene 4895 Neighboring gene retinoic acid early transcript 1E

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC319887

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001254744.1 → NP_001241673.1  uncharacterized protein LOC319887 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) encodes the longer isoform (1).
      Source sequence(s)
      AK045260, BX515464
      Consensus CDS
      CCDS56696.1
      UniProtKB/TrEMBL
      J3QML9, Q8BLG7
      Conserved Domains (1) summary
      cl21453
      Location:114 → 177
      PKc_like; Protein Kinases, catalytic domain

    2. NM_001254745.1 → NP_001241674.1  uncharacterized protein LOC319887 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has an alternate 3' exon, compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK053193, BX515464
      Consensus CDS
      CCDS56697.1
      UniProtKB/TrEMBL
      F6UW72, Q8BW91
      Conserved Domains (1) summary
      cl21453
      Location:114 → 181
      PKc_like; Protein Kinases, catalytic domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      21988949..22025169 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017313965.3 → XP_017169454.1  uncharacterized protein LOC319887 isoform X1

      Conserved Domains (1) summary
      cl21453
      Location:114 → 186
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein Strain
    Heading Accession and Version

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