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    Ptprcap protein tyrosine phosphatase, receptor type, C polypeptide-associated protein [ Mus musculus (house mouse) ]

    Gene ID: 19265, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ptprcapprovided by MGI
    Official Full Name
    protein tyrosine phosphatase, receptor type, C polypeptide-associated proteinprovided by MGI
    Primary source
    MGI:MGI:97811
    See related
    Ensembl:ENSMUSG00000045826
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    LSM; LPAP; LSM-1; CD-45-; AI605264; CD-45-AP
    Expression
    Biased expression in thymus adult (RPKM 458.8), spleen adult (RPKM 332.6) and 2 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ptprcap in Genome Data Viewer
    Location:
    19 A; 19 3.86 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (4204645..4206709)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (4154646..4156710)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (4154646..4156710)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 152 Neighboring gene coronin, actin binding protein 1B Neighboring gene ribosomal protein S6 kinase, polypeptide 2 Neighboring gene carnosine synthase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein tyrosine phosphatase receptor type C-associated protein
    Names
    CD45-AP
    CD45-associated protein
    PTPRC-associated protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_016933.3NP_058629.2  protein tyrosine phosphatase receptor type C-associated protein precursor

      See identical proteins and their annotated locations for NP_058629.2

      Status: VALIDATED

      Source sequence(s)
      AA265746, AI323196, AI627045, AW049152, BB840651
      Consensus CDS
      CCDS37884.1
      UniProtKB/Swiss-Prot
      Q64697
      UniProtKB/TrEMBL
      Q542J3
      Related
      ENSMUSP00000053412.9, ENSMUST00000061086.9
      Conserved Domains (1) summary
      pfam15713
      Location:58197
      PTPRCAP; Protein tyrosine phosphatase receptor type C-associated

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      4204645..4206709
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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