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    D8Ertd738e DNA segment, Chr 8, ERATO Doi 738, expressed [ Mus musculus (house mouse) ]

    Gene ID: 101966, updated on 5-Mar-2024

    Summary

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    Official Symbol
    D8Ertd738eprovided by MGI
    Official Full Name
    DNA segment, Chr 8, ERATO Doi 738, expressedprovided by MGI
    Primary source
    MGI:MGI:1289231
    See related
    Ensembl:ENSMUSG00000019362 AllianceGenome:MGI:1289231
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C19orf53 (chromosome 19 open reading frame 53). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 54.2), kidney adult (RPKM 42.9) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 C2; 8 40.72 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (84972862..84978340, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (84246233..84251711, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene microRNA 3074-2 Neighboring gene microRNA 24-2 Neighboring gene zinc finger SWIM-type containing 4 Neighboring gene STARR-positive B cell enhancer ABC_E59 Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene YJU2 splicing factor homolog B Neighboring gene STARR-positive B cell enhancer ABC_E297 Neighboring gene THO complex 6 homolog pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Jade-1S phosphorylation induced by CK1α contributes to cell cycle progression. Borgal L, et al. Cell Cycle, 2016. PMID 26919559, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC18818

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    leydig cell tumor 10 kDa protein homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007571.2 → NP_001007572.1  leydig cell tumor 10 kDa protein homolog

      See identical proteins and their annotated locations for NP_001007572.1

      Status: VALIDATED

      Source sequence(s)
      CA318976, CF740495
      Consensus CDS
      CCDS40408.1
      UniProtKB/Swiss-Prot
      Q8R1F0
      Related
      ENSMUSP00000019506.8, ENSMUST00000019506.9
      Conserved Domains (1) summary
      pfam09495
      Location:1 → 69
      DUF2462; Protein of unknown function (DUF2462)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      84972862..84978340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312495.1 → XP_017167984.1  leydig cell tumor 10 kDa protein homolog isoform X1

      UniProtKB/Swiss-Prot
      Q8R1F0
      Conserved Domains (1) summary
      pfam09495
      Location:1 → 69
      DUF2462; Protein of unknown function (DUF2462)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R1F0.1 GenPept UniProtKB/Swiss-Prot:Q8R1F0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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