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    Spon1 spondin 1, (f-spondin) extracellular matrix protein [ Mus musculus (house mouse) ]

    Gene ID: 233744, updated on 23-Jun-2021

    Summary

    Official Symbol
    Spon1provided by MGI
    Official Full Name
    spondin 1, (f-spondin) extracellular matrix proteinprovided by MGI
    Primary source
    MGI:MGI:2385287
    See related
    Ensembl:ENSMUSG00000038156
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    F; FSP; AI666765; AW455831; BC020531; D330035F22Rik
    Expression
    Broad expression in lung adult (RPKM 35.4), ovary adult (RPKM 16.9) and 17 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Spon1 in Genome Data Viewer
    Location:
    7; 7 F1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (113365235..113642610)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (113765998..114043375)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (120909512..121186889)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39072 Neighboring gene predicted gene 5600 Neighboring gene predicted gene, 51454 Neighboring gene uncharacterized LOC118567497 Neighboring gene related RAS viral (r-ras) oncogene 2 Neighboring gene coatomer protein complex, subunit beta 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145584.2NP_663559.1  spondin-1 precursor

      See identical proteins and their annotated locations for NP_663559.1

      Status: VALIDATED

      Source sequence(s)
      AC102861, AC118201, AC158213
      Consensus CDS
      CCDS21757.1
      UniProtKB/Swiss-Prot
      Q8VCC9
      Related
      ENSMUSP00000041157.10, ENSMUST00000046687.16
      Conserved Domains (3) summary
      cd08544
      Location:43182
      Reeler; Reeler, the N-terminal domain of reelin, F-spondin, and a variety of other proteins
      pfam00090
      Location:562610
      TSP_1; Thrombospondin type 1 domain
      pfam06468
      Location:205392
      Spond_N; Spondin_N

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      113365235..113642610
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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