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    Klrd1 killer cell lectin-like receptor, subfamily D, member 1 [ Mus musculus (house mouse) ]

    Gene ID: 16643, updated on 6-May-2021

    Summary

    Official Symbol
    Klrd1provided by MGI
    Official Full Name
    killer cell lectin-like receptor, subfamily D, member 1provided by MGI
    Primary source
    MGI:MGI:1196275
    See related
    Ensembl:ENSMUSG00000030165
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CD94
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Klrd1 in Genome Data Viewer
    Location:
    6 F3; 6 63.42 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (129565055..129575738)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (129588092..129598775)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (129543508..129548671)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700101I11 gene Neighboring gene gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1 Neighboring gene killer cell lectin-like receptor family E member 1 Neighboring gene killer cell lectin-like receptor subfamily K, member 1 Neighboring gene killer cell lectin-like receptor subfamily C, member 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables HLA-E specific inhibitory MHC class Ib receptor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables MHC class I protein complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables MHC class Ib protein binding, via antigen binding groove ISO
    Inferred from Sequence Orthology
    more info
     
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein antigen binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    part_of receptor complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    natural killer cells antigen CD94

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010654.4NP_034784.1  natural killer cells antigen CD94

      See identical proteins and their annotated locations for NP_034784.1

      Status: VALIDATED

      Source sequence(s)
      AK136548, AK162976
      Consensus CDS
      CCDS57456.1
      UniProtKB/Swiss-Prot
      O54707
      Related
      ENSMUSP00000107694.3, ENSMUST00000112063.9
      Conserved Domains (1) summary
      cd03593
      Location:61176
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      129565055..129575738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006505655.3XP_006505718.1  natural killer cells antigen CD94 isoform X1

      See identical proteins and their annotated locations for XP_006505718.1

      UniProtKB/Swiss-Prot
      O54707
      Conserved Domains (1) summary
      cd03593
      Location:61176
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    2. XM_006505656.1XP_006505719.1  natural killer cells antigen CD94 isoform X2

      Conserved Domains (2) summary
      cd03593
      Location:52153
      CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
      pfam08391
      Location:941
      Ly49; Ly49-like protein, N-terminal region
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