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    Irx3os iroquois homeobox 3, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 319388, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Irx3osprovided by MGI
    Official Full Name
    iroquois homeobox 3, opposite strandprovided by MGI
    Primary source
    MGI:MGI:2441953
    See related
    AllianceGenome:MGI:2441953
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D230002A01Rik
    Summary
    Is expressed in diencephalon lateral wall mantle layer; medulla oblongata basal plate mantle layer; pons mantle layer; and spinal cord mantle layer. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in lung adult (RPKM 1.9), CNS E11.5 (RPKM 1.2) and 12 other tissues See more
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    Genomic context

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    See Irx3os in Genome Data Viewer
    Location:
    8 C5; 8 44.55 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (92509225..92600347)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (91803336..91873722)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene VISTA enhancer mm1211 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene predicted gene, 36325 Neighboring gene STARR-seq mESC enhancer starr_22311 Neighboring gene predicted gene, 36380 Neighboring gene predicted gene, 39222 Neighboring gene Iroquois related homeobox 3 Neighboring gene predicted gene, 39223 Neighboring gene STARR-seq mESC enhancer starr_22312 Neighboring gene STARR-seq mESC enhancer starr_22313 Neighboring gene VISTA enhancer mm1651 Neighboring gene predicted gene, 36670 Neighboring gene STARR-seq mESC enhancer starr_22315 Neighboring gene predicted gene, 36843

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Other Names

    • Irx3 opposite strand transcript

    Clone Names

    • AC151834.1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      92509225..92600347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004934959.1 RNA Sequence

    2. XR_004934960.1 RNA Sequence

    3. XR_004934958.1 RNA Sequence

    4. XR_004934957.1 RNA Sequence

    5. XR_001778626.2 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_176904.2: Suppressed sequence

      Description
      NM_176904.2: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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