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    BB283400 expressed sequence BB283400 [ Mus musculus (house mouse) ]

    Gene ID: 100463519, updated on 8-Feb-2024

    Summary

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    Official Symbol
    BB283400provided by MGI
    Official Full Name
    expressed sequence BB283400provided by MGI
    Primary source
    MGI:MGI:3034268
    See related
    AllianceGenome:MGI:3034268
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rncr4
    Summary
    Is expressed in retina inner nuclear layer and retina outer nuclear layer. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    6; 6 A3.3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (30176622..30178045)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (30176623..30178046)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene microRNA cluster 35, host gene Neighboring gene microRNA 183 Neighboring gene microRNA 96 Neighboring gene predicted gene, 31221 Neighboring gene ubiquitin-conjugating enzyme E2H Neighboring gene STARR-seq mESC enhancer starr_15462 Neighboring gene CapStarr-seq enhancer MGSCv37_chr6:30250507-30250717 Neighboring gene STARR-positive B cell enhancer ABC_E4817

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A network comprising short and long noncoding RNAs and RNA helicase controls mouse retina architecture. Krol J, et al. Nat Commun, 2015 Jun 4. PMID 26041499, Free PMC Article
    2. Genomic analysis of mouse retinal development. Blackshaw S, et al. PLoS Biol, 2004 Sep. PMID 15226823, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038124.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC161538

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      30176622..30178045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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