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    Slc23a3 solute carrier family 23, member 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 367298, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Slc23a3provided by RGD
    Official Full Name
    solute carrier family 23, member 3provided by RGD
    Primary source
    RGD:1307402
    See related
    Ensembl:ENSRNOG00000018266 AllianceGenome:RGD:1307402
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be integral component of membrane. Orthologous to human SLC23A3 (solute carrier family 23 member 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 93.3), Spleen (RPKM 8.3) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Slc23a3 in Genome Data Viewer
    Location:
    9q33
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (84071286..84081951, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (76622621..76633188, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (82328007..82338576, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene Indian hedgehog signaling molecule Neighboring gene nonhomologous end-joining factor 1 Neighboring gene ATP synthase membrane subunit c locus 2 like 1 Neighboring gene cyclin Pas1/PHO80 domain containing 1 Neighboring gene reticulophagy regulator family member 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in hypoxanthine transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 23 member 3
    Names
    solute carrier family 23 (nucleobase transporters), member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109006.1 → NP_001102476.1  solute carrier family 23 member 3

      See identical proteins and their annotated locations for NP_001102476.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474004
      UniProtKB/TrEMBL
      A6JVX4, D3ZG28
      Related
      ENSRNOP00000024667.3, ENSRNOT00000024667.6
      Conserved Domains (1) summary
      pfam00860
      Location:79 → 476
      Xan_ur_permease; Permease family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      84071286..84081951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083974.2 → XP_038939902.1  solute carrier family 23 member 3 isoform X2

      Conserved Domains (1) summary
      pfam00860
      Location:3 → 379
      Xan_ur_permease; Permease family

    2. XM_039083973.2 → XP_038939901.1  solute carrier family 23 member 3 isoform X2

      Conserved Domains (1) summary
      pfam00860
      Location:3 → 379
      Xan_ur_permease; Permease family

    3. XM_008767280.3 → XP_008765502.1  solute carrier family 23 member 3 isoform X2

      See identical proteins and their annotated locations for XP_008765502.1

      Conserved Domains (1) summary
      pfam00860
      Location:3 → 379
      Xan_ur_permease; Permease family

    4. XM_006245260.4 → XP_006245322.1  solute carrier family 23 member 3 isoform X2

      See identical proteins and their annotated locations for XP_006245322.1

      Conserved Domains (1) summary
      pfam00860
      Location:3 → 379
      Xan_ur_permease; Permease family

    5. XM_039083972.2 → XP_038939900.1  solute carrier family 23 member 3 isoform X1

      UniProtKB/TrEMBL
      A6JVX4, D3ZG28
      Conserved Domains (1) summary
      pfam00860
      Location:79 → 476
      Xan_ur_permease; Permease family

    6. XM_063267511.1 → XP_063123581.1  solute carrier family 23 member 3 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

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