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    Gask1b golgi associated kinase 1B [ Mus musculus (house mouse) ]

    Gene ID: 68659, updated on 5-Mar-2024

    Summary

    Official Symbol
    Gask1bprovided by MGI
    Official Full Name
    golgi associated kinase 1Bprovided by MGI
    Primary source
    MGI:MGI:1915909
    See related
    Ensembl:ENSMUSG00000027955 AllianceGenome:MGI:1915909
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ened; GaskbB; Fam198b; 1110032E23Rik; 2210419I08Rik
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Is expressed in several structures, including alimentary system; axial skeleton; eye; heart; and nervous system. Orthologous to human GASK1B (golgi associated kinase 1B). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in lung adult (RPKM 6.8), subcutaneous fat pad adult (RPKM 5.7) and 26 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    3 E3; 3 35.13 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (79791795..79853585)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (79884484..79946278)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08007 Neighboring gene VISTA enhancer mm1650 Neighboring gene relaxin/insulin-like family peptide receptor 1 Neighboring gene STARR-seq mESC enhancer starr_08009 Neighboring gene STARR-positive B cell enhancer ABC_E3438 Neighboring gene transmembrane protein 144 Neighboring gene STARR-seq mESC enhancer starr_08010 Neighboring gene STARR-seq mESC enhancer starr_08011 Neighboring gene predicted gene, 26420 Neighboring gene STARR-seq mESC enhancer starr_08012 Neighboring gene STARR-seq mESC enhancer starr_08013 Neighboring gene VISTA enhancer mm1052 Neighboring gene STARR-seq mESC enhancer starr_08014 Neighboring gene STARR-seq mESC enhancer starr_08015 Neighboring gene RIKEN cDNA A330069K06 gene Neighboring gene STARR-seq mESC enhancer starr_08016 Neighboring gene STARR-seq mESC enhancer starr_08017 Neighboring gene eukaryotic translation initiation factor 3, subunit M pseudogene Neighboring gene STARR-seq mESC enhancer starr_08018 Neighboring gene predicted gene, 57716

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    Golgi-associated kinase 1B
    Names
    expressed in nerve and epithelium during development
    family with sequence similarity 198, member B
    protein ENED
    protein FAM198B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133187.3NP_573450.2  Golgi-associated kinase 1B

      See identical proteins and their annotated locations for NP_573450.2

      Status: VALIDATED

      Source sequence(s)
      AC119162, AK143522
      Consensus CDS
      CCDS17422.1
      UniProtKB/Swiss-Prot
      B3VSA6, Q3UPI1, Q6PGJ9, Q8C781, Q9ET25
      Related
      ENSMUSP00000029567.9, ENSMUST00000029567.9
      Conserved Domains (1) summary
      pfam15051
      Location:202516
      FAM198; FAM198 protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      79791795..79853585
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006501984.5XP_006502047.1  Golgi-associated kinase 1B isoform X1

      See identical proteins and their annotated locations for XP_006502047.1

      UniProtKB/Swiss-Prot
      B3VSA6, Q3UPI1, Q6PGJ9, Q8C781, Q9ET25
      Related
      ENSMUSP00000114093.2, ENSMUST00000118853.8
      Conserved Domains (1) summary
      pfam15051
      Location:202516
      FAM198; FAM198 protein
    2. XM_006501985.2XP_006502048.1  Golgi-associated kinase 1B isoform X1

      See identical proteins and their annotated locations for XP_006502048.1

      UniProtKB/Swiss-Prot
      B3VSA6, Q3UPI1, Q6PGJ9, Q8C781, Q9ET25
      Conserved Domains (1) summary
      pfam15051
      Location:202516
      FAM198; FAM198 protein