Utp14b UTP14B small subunit processome component [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Utp14bprovided by MGI
Official Full Name: UTP14B small subunit processome componentprovided by MGI
Primary source: MGI:MGI:2445092
See related: Ensembl:ENSMUSG00000079470 AllianceGenome:MGI:2445092
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: jsd; 4932411L21Rik
Summary: Acts upstream of or within spermatogenesis. Predicted to be located in cytosol. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human UTP14A (UTP14A small subunit processome component) and UTP14C (UTP14C small subunit processome component). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in colon adult (RPKM 6.7), CNS E11.5 (RPKM 4.2) and 27 other tissues See more
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Genomic context

Location:: 1 C4; 1 40.84 cM

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	1	NC_000067.7 (78635600..78645305)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	1	NC_000067.6 (78657825..78667601)

Chromosome 1 - NC_000067.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

In adult male mice homozygous for the juvenile spermatogonial depletion (Utp14b jsd) mutation in the Utp14b gene, type A spermatogonia proliferate but undergo apoptosis before differentiation.
Title: p53-dependent apoptosis in the inhibition of spermatogonial differentiation in juvenile spermatogonial depletion (Utp14bjsd) mice.
inhibition of spermatogonial differentiation in jsd mice is a result of testosterone acting through the AR only at scrotal temperatures
Title: Spermatogonial differentiation in juvenile spermatogonial depletion (jsd) mice with androgen receptor or follicle-stimulating hormone mutations.
The novel cell-type-specific promoter for Utp14b likely evolved later, as the protein may have acquired a germ cell-specific function in spermatid development.
Title: Utp14b: a unique retrogene within a gene that has acquired multiple promoters and a specific function in spermatogenesis.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Spontaneous (1)
Endonuclease-mediated (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by MGI

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell differentiation	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within meiotic cell cycle	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within multicellular organism development	IEA Inferred from Electronic Annotation more info
involved_in rRNA processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within ribosome biogenesis	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within spermatogenesis	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	ISO Inferred from Sequence Orthology more info
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleolus	ISO Inferred from Sequence Orthology more info
located_in nucleus	IEA Inferred from Electronic Annotation more info
part_of small-subunit processome	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: U3 small nucleolar RNA-associated protein 14 homolog B

Names: UTP14, U3 small nucleolar ribonucleoprotein, homolog B; juvenile spermatogonial depletion protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001001981.4 → NP_001001981.2 U3 small nucleolar RNA-associated protein 14 homolog B

See identical proteins and their annotated locations for NP_001001981.2

Status: VALIDATED

Source sequence(s)

AC156613

Consensus CDS

CCDS15086.1

UniProtKB/TrEMBL

B2RUE3, E9Q9S3

Related

ENSMUSP00000052149.6, ENSMUST00000053760.12

Conserved Domains (1) summary

pfam04615
Location:55 → 741

Utp14; Utp14 protein
NM_001136226.2 → NP_001129698.1 U3 small nucleolar RNA-associated protein 14 homolog B

See identical proteins and their annotated locations for NP_001129698.1

Status: VALIDATED

Source sequence(s)

AC156613

Consensus CDS

CCDS15086.1

UniProtKB/TrEMBL

B2RUE3, E9Q9S3

Related

ENSMUSP00000121391.2, ENSMUST00000151622.2

Conserved Domains (1) summary

pfam04615
Location:55 → 741

Utp14; Utp14 protein
NM_001409066.1 → NP_001395995.1 U3 small nucleolar RNA-associated protein 14 homolog B

Status: VALIDATED

Source sequence(s)

AC156613

UniProtKB/TrEMBL

E9Q9S3
NM_001409067.1 → NP_001395996.1 U3 small nucleolar RNA-associated protein 14 homolog B

Status: VALIDATED

Source sequence(s)

AC156613

UniProtKB/TrEMBL

E9Q9S3