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    Stra6l STRA6-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298077, updated on 29-Feb-2024

    Summary

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    Official Symbol
    Stra6lprovided by RGD
    Official Full Name
    STRA6-likeprovided by RGD
    Primary source
    RGD:1305807
    See related
    Ensembl:ENSRNOG00000010497 AllianceGenome:RGD:1305807
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1305807
    Summary
    Predicted to be involved in vitamin A import. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Liver (RPKM 197.0), Spleen (RPKM 21.8) and 1 other tissue See more
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    Genomic context

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    See Stra6l in Genome Data Viewer
    Location:
    5q22
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (64902552..64944216)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (60106949..60147546)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (61425451..61467653)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene aldehyde dehydrogenase 1 family, member B1 Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene coiled-coil domain containing 180 Neighboring gene uncharacterized LOC120102865 Neighboring gene uncharacterized LOC120102866 Neighboring gene tudor domain containing 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC114401

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables retinol transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within establishment of localization in cell ISO
    Inferred from Sequence Orthology
    more info
    		  
    acts_upstream_of_or_within retinol transport ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in vitamin A import into cell IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within vitamin A import into cell ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    STRA6-like
    Names
    Stimulated by retinoic acid gene 6 protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025276.1 → NP_001020447.1  STRA6-like

      See identical proteins and their annotated locations for NP_001020447.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097368
      UniProtKB/TrEMBL
      A0A8I5ZVU0, A6IJA5, F7EQ25, Q4QR84
      Related
      ENSRNOP00000081815.1, ENSRNOT00000112739.1
      Conserved Domains (1) summary
      pfam14752
      Location:13 → 602
      RBP_receptor; Retinol binding protein receptor

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      64902552..64944216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238038.5 → XP_006238100.1  STRA6-like isoform X1

      UniProtKB/TrEMBL
      F7EQ25
      Conserved Domains (1) summary
      pfam14752
      Location:13 → 559
      RBP_receptor; Retinol binding protein receptor
    Nucleotide Protein Strain
    Heading Accession and Version

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