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    Ubtd1 ubiquitin domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309373, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Ubtd1provided by RGD
    Official Full Name
    ubiquitin domain containing 1provided by RGD
    Primary source
    RGD:1308172
    See related
    Ensembl:ENSRNOG00000013813 AllianceGenome:RGD:1308172
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human UBTD1 (ubiquitin domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 249.7), Muscle (RPKM 89.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ubtd1 in Genome Data Viewer
    Location:
    1q54
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (250743883..250795103)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (240794570..240845795)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (261229347..261280543)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 16 Neighboring gene MMS19 homolog, cytosolic iron-sulfur assembly component Neighboring gene U6 spliceosomal RNA Neighboring gene ankyrin repeat domain 2 Neighboring gene 4-hydroxy-2-oxoglutarate aldolase 1 Neighboring gene hypothetical protein LOC682010

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ubiquitin domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013153.1 → NP_001013171.1  ubiquitin domain-containing protein 1

      See identical proteins and their annotated locations for NP_001013171.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079260
      UniProtKB/Swiss-Prot
      Q68FV8
      UniProtKB/TrEMBL
      A6JHA0
      Related
      ENSRNOP00000018485.5, ENSRNOT00000018485.7
      Conserved Domains (2) summary
      pfam16455
      Location:25 → 127
      UBD; Ubiquitin-binding domain
      cd17120
      Location:151 → 219
      Ubl_UBTD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 1 (UBTD1)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      250743883..250795103
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008760420.4 → XP_008758642.1  ubiquitin domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_008758642.1

      Conserved Domains (2) summary
      cd17120
      Location:110 → 178
      Ubl_UBTD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 1 (UBTD1)
      pfam16455
      Location:1 → 85
      UBD; Ubiquitin-binding domain

    2. XM_008760421.4 → XP_008758643.1  ubiquitin domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_008758643.1

      Conserved Domains (2) summary
      cd17120
      Location:110 → 178
      Ubl_UBTD1; ubiquitin-like (Ubl) domain found in ubiquitin domain-containing protein 1 (UBTD1)
      pfam16455
      Location:1 → 85
      UBD; Ubiquitin-binding domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68FV8.1 GenPept UniProtKB/Swiss-Prot:Q68FV8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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