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    Lnc215 long non-coding RNA 215 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 104845260, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Lnc215provided by RGD
    Official Full Name
    long non-coding RNA 215provided by RGD
    Primary source
    RGD:9685088
    See related
    AllianceGenome:RGD:9685088
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Lncsn215
    Summary
    The long RNA produced from this gene shows differential day versus night expression in the pineal gland. Alternative splicing results in multiple transcript variants, though the full-length structure of some of these variants is not known. [provided by RefSeq, Dec 2014]
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    Genomic context

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    See Lnc215 in Genome Data Viewer
    Location:
    8q22
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (50742804..50860909)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (41845727..41963840)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (45691196..45809133)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094126 Neighboring gene uncharacterized LOC120094124 Neighboring gene Mir100 Mirlet7a-2 Mir125b-1 cluster host gene like Neighboring gene uncharacterized LOC120094125 Neighboring gene uncharacterized LOC134480160 Neighboring gene microRNA let-7a-2 Neighboring gene microRNA 3596a Neighboring gene microRNA 100 Neighboring gene microRNA 125b-1 Neighboring gene ischemia related factor vof-16 Neighboring gene uncharacterized LOC120094127 Neighboring gene uncharacterized LOC102547107

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Circadian changes in long noncoding RNAs in the pineal gland. Coon SL, et al. Proc Natl Acad Sci U S A, 2012 Aug 14. PMID 22864914, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_126581.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      50742804..50860909
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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