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    LOC102556004 uncharacterized LOC102556004 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102556004, updated on 29-Feb-2024

    Summary

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    Symbol
    LOC102556004provided by RGD
    Full Name
    uncharacterized LOC102556004provided by RGD
    Primary source
    RGD:7721328
    See related
    AllianceGenome:RGD:7721328
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Brain (RPKM 58.7), Thymus (RPKM 45.3) and 9 other tissues See more
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    Genomic context

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    See LOC102556004 in Genome Data Viewer
    Location:
    5q11
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (14078948..14145878)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (9296084..9316974)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (8977979..8980098)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 42 Neighboring gene transcription factor 24 Neighboring gene minichromosome maintenance domain containing 2 Neighboring gene small nucleolar RNA, C/D box 87 Neighboring gene serum/glucocorticoid regulated kinase family, member 3 Neighboring gene eukaryotic translation elongation factor 1 gamma, pseudogene 4 Neighboring gene interferon-induced transmembrane protein 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. Makarova JA, et al. Gene, 2005 Dec 19. PMID 16226852

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      14078948..14145878
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_592380.4 RNA Sequence

    2. XR_010066474.1 RNA Sequence

    3. XR_010066475.1 RNA Sequence

    4. XR_010066476.1 RNA Sequence

    5. XR_005504571.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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