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    Cnih1 cornichon family member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289994, updated on 2-May-2024

    Summary

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    Official Symbol
    Cnih1provided by RGD
    Official Full Name
    cornichon family member 1provided by RGD
    Primary source
    RGD:1312030
    See related
    Ensembl:ENSRNOG00000009811 AllianceGenome:RGD:1312030
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Cnih
    Summary
    Predicted to be involved in vesicle-mediated transport. Predicted to be integral component of membrane. Orthologous to human CNIH1 (cornichon family AMPA receptor auxiliary protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 227.9), Heart (RPKM 222.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cnih1 in Genome Data Viewer
    Location:
    15p14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (22517755..22529651, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (20037885..20049857, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (23568568..23580342, complement)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481956 Neighboring gene cyclin-dependent kinase inhibitor 3 Neighboring gene glia maturation factor, beta Neighboring gene cell growth regulator with ring finger domain 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein cornichon homolog 1
    Names
    cornichon family AMPA receptor auxiliary protein 1
    cornichon homolog
    protein cornichon homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106029.2 → NP_001099499.1  protein cornichon homolog 1

      See identical proteins and their annotated locations for NP_001099499.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158747
      UniProtKB/TrEMBL
      B0BNA6
      Conserved Domains (1) summary
      pfam03311
      Location:7 → 135
      Cornichon; Cornichon protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      22517755..22529651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039093098.2 → XP_038949026.1  protein cornichon homolog 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K112
      Related
      ENSRNOP00000071661.1
      Conserved Domains (1) summary
      pfam03311
      Location:7 → 151
      Cornichon; Cornichon protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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