U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Rwdd4 RWD domain containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502084, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Rwdd4provided by RGD
    Official Full Name
    RWD domain containing 4provided by RGD
    Primary source
    RGD:1564132
    See related
    Ensembl:ENSRNOG00000022500 AllianceGenome:RGD:1564132
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rwdd4a
    Summary
    Orthologous to human RWDD4 (RWD domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 141.2), Adrenal (RPKM 132.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    16q11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (51447384..51465718, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (44714698..44733090, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (47856522..47874921, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene ERH, mRNA splicing and mitosis factor, pseudogene 2 Neighboring gene uncharacterized LOC134482503 Neighboring gene trafficking protein particle complex subunit 11 Neighboring gene uncharacterized LOC134482545 Neighboring gene uncharacterized LOC102551690 Neighboring gene small nucleolar RNA SNORA70

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    RWD domain-containing protein 4
    Names
    RWD domain containing 4A
    family with sequence similarity 28, member A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034994.1 → NP_001030166.1  RWD domain-containing protein 4

      See identical proteins and their annotated locations for NP_001030166.1

      Status: PROVISIONAL

      Source sequence(s)
      BC092581
      UniProtKB/Swiss-Prot
      Q569B7
      UniProtKB/TrEMBL
      A0A0G2K617, A6JPL3
      Related
      ENSRNOP00000033649.3, ENSRNOT00000035323.5
      Conserved Domains (1) summary
      pfam05773
      Location:4 → 107
      RWD; RWD domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      51447384..51465718 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275654.1 → XP_063131724.1  RWD domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AT52

    2. XM_063275655.1 → XP_063131725.1  RWD domain-containing protein 4 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q569B7.1 GenPept UniProtKB/Swiss-Prot:Q569B7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous