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    Scgb1c1 secretoglobin, family 1C, member 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309100, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Scgb1c1provided by RGD
    Official Full Name
    secretoglobin, family 1C, member 1provided by RGD
    Primary source
    RGD:1561432
    See related
    Ensembl:ENSRNOG00000012847 AllianceGenome:RGD:1561432
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ryd5; RGD1561432
    Summary
    Predicted to be located in extracellular region. Orthologous to several human genes including SCGB1C2 (secretoglobin family 1C member 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Adrenal (RPKM 108.0), Uterus (RPKM 85.0) and 6 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    1q41
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205352216..205354656)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (195922660..195925022)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213595240..213596459)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene Sec61 translocon subunit gamma, pseudogene 3 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene urate (5-hydroxyiso-) hydrolase Neighboring gene ciliary microtubule associated protein 1A Neighboring gene Bet1 golgi vesicular membrane trafficking protein-like Neighboring gene RIC8 guanine nucleotide exchange factor A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Novel genes for potential ligand-binding proteins in subregions of the olfactory mucosa. Dear TN, et al. EMBO J, 1991 Oct. PMID 1915264, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    secretoglobin family 1C member 1
    Names
    potential ligand-binding protein
    secretoglobin RYD5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107561.1 → NP_001101031.1  secretoglobin family 1C member 1 precursor

      See identical proteins and their annotated locations for NP_001101031.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/Swiss-Prot
      Q05702
      UniProtKB/TrEMBL
      A6HXK7, G3V7P0
      Related
      ENSRNOP00000017137.5, ENSRNOT00000017137.6
      Conserved Domains (1) summary
      pfam01099
      Location:25 → 90
      Uteroglobin; Uteroglobin family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      205352216..205354656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078911.2 → XP_038934839.1  secretoglobin family 1C member 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6A4Z2
      Related
      ENSRNOP00000087030.1
      Conserved Domains (1) summary
      pfam01099
      Location:25 → 87
      Uteroglobin; Uteroglobin family
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05702.1 GenPept UniProtKB/Swiss-Prot:Q05702

    Gene LinkOut

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