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    Lpal2 lipoprotein(a) like 2, pseudogene [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690326, updated on 6-Jun-2024

    Summary

    Official Symbol
    Lpal2provided by RGD
    Official Full Name
    lipoprotein(a) like 2, pseudogeneprovided by RGD
    Primary source
    RGD:1597362
    See related
    Ensembl:ENSRNOG00000024508 AllianceGenome:RGD:1597362
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human LPAL2 (lipoprotein(a) like 2, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 12.9), Testes (RPKM 5.6) and 7 other tissues See more
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    Genomic context

    See Lpal2 in Genome Data Viewer
    Location:
    4q42
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (166938777..166995743)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (165207378..165264321)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (165682977..165737759)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene serine/threonine/tyrosine kinase 1 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene Y box binding protein 3 Neighboring gene taste receptor, type 2, member 130 Neighboring gene taste receptor, type 2, member 107

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein LOC690326

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109578.2NP_001103048.1  uncharacterized protein LOC690326 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001103048.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IM98, D3ZVB6
      Related
      ENSRNOP00000032516.5, ENSRNOT00000034403.5
    2. NM_001430333.1NP_001417262.1  uncharacterized protein LOC690326 isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6G3E2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      166938777..166995743
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039108387.2XP_038964315.1  uncharacterized protein LOC690326 isoform X1

      Related
      ENSRNOP00000079502.1