U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    D430041D05Rikl RIKEN cDNA D430041D05 gene like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100362814, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    D430041D05Riklprovided by RGD
    Official Full Name
    RIKEN cDNA D430041D05 gene likeprovided by RGD
    Primary source
    RGD:2323964
    See related
    Ensembl:ENSRNOG00000011132 AllianceGenome:RGD:2323964
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310754
    Summary
    Predicted to be integral component of membrane. Orthologous to human KIAA1549L (KIAA1549 like). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 63.1), Muscle (RPKM 13.2) and 2 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See D430041D05Rikl in Genome Data Viewer
    Location:
    3q32
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (110961478..111237308, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (90506559..90782427, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (94058546..94334805, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene similar to human chromosome 11 open reading frame 91 Neighboring gene CD59b molecule Neighboring gene homeodomain interacting protein kinase 3 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    UPF0606 protein KIAA1549L homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419547.1 → NP_001406476.1  UPF0606 protein KIAA1549L homolog

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A8I6GJS5
      Related
      ENSRNOP00000091597.1, ENSRNOT00000119491.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      110961478..111237308 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008762075.3 → XP_008760297.2  UPF0606 protein KIAA1549L homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6GJS5

    2. XM_017592182.3 → XP_017447671.1  UPF0606 protein KIAA1549L homolog isoform X3

      UniProtKB/TrEMBL
      F1LXC7
      Related
      ENSRNOP00000015073.8

    3. XM_039106457.2 → XP_038962385.1  UPF0606 protein KIAA1549L homolog isoform X4

      UniProtKB/TrEMBL
      A0A8I6AT67, F1LXC7
      Related
      ENSRNOP00000097723.1
      Conserved Domains (1) summary
      pfam12877
      Location:382 → 1020
      DUF3827; Domain of unknown function (DUF3827)

    4. XM_039106456.2 → XP_038962384.1  UPF0606 protein KIAA1549L homolog isoform X2

      UniProtKB/TrEMBL
      F1LXC7
      Conserved Domains (1) summary
      pfam12877
      Location:497 → 1135
      DUF3827; Domain of unknown function (DUF3827)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.