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    9530057J20Rik RIKEN cDNA 9530057J20 gene [ Mus musculus (house mouse) ]

    Gene ID: 78672, updated on 8-Feb-2024

    Summary

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    Official Symbol
    9530057J20Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 9530057J20 geneprovided by MGI
    Primary source
    MGI:MGI:1925922
    See related
    AllianceGenome:MGI:1925922
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm31371
    Expression
    Biased expression in testis adult (RPKM 59.5) and frontal lobe adult (RPKM 3.1) See more
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    Genomic context

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    See 9530057J20Rik in Genome Data Viewer
    Location:
    8 A2; 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (20478979..20510931)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (19903378..19935330)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene cadherin 11 pseudogene Neighboring gene STARR-seq mESC enhancer starr_20874 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:19856799-19857099 Neighboring gene predicted gene, 40468 Neighboring gene mitochondrial import receptor subunit TOM20 homolog Neighboring gene predicted gene, 40466

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    cell surface glycoprotein 1; uncharacterized protein LOC78672

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      20478979..20510931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030243910.1 → XP_030099770.1  cell surface glycoprotein 1

      Conserved Domains (2) summary
      PHA03247
      Location:229 → 652
      PHA03247; large tegument protein UL36; Provisional
      cl39094
      Location:2 → 50
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein Strain
    Heading Accession and Version

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