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    1700030K09Rik RIKEN cDNA 1700030K09 gene [ Mus musculus (house mouse) ]

    Gene ID: 72254, updated on 5-Mar-2024

    Summary

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    Official Symbol
    1700030K09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700030K09 geneprovided by MGI
    Primary source
    MGI:MGI:1919504
    See related
    Ensembl:ENSMUSG00000052794 AllianceGenome:MGI:1919504
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C19orf44 (chromosome 19 open reading frame 44). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 21.3), ovary adult (RPKM 6.6) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    Location:
    8 B3.3; 8 35.08 cM
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (73197724..73214385)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (72443880..72460541)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8247 Neighboring gene epidermal growth factor receptor pathway substrate 15-like 1 Neighboring gene STARR-positive B cell enhancer ABC_E9731 Neighboring gene STARR-positive B cell enhancer ABC_E5020 Neighboring gene predicted gene, 46043 Neighboring gene calreticulin 3 Neighboring gene STARR-positive B cell enhancer ABC_E359 Neighboring gene STARR-positive B cell enhancer ABC_E6662 Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene microRNA 7068 Neighboring gene solute carrier family 35, member E1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C19orf44 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028170.2 → NP_082446.2  uncharacterized protein C19orf44 homolog

      See identical proteins and their annotated locations for NP_082446.2

      Status: VALIDATED

      Source sequence(s)
      AK133815, CO043582
      Consensus CDS
      CCDS22414.1
      UniProtKB/Swiss-Prot
      Q3UZJ9, Q922C1
      UniProtKB/TrEMBL
      E9Q7C0
      Related
      ENSMUSP00000063244.7, ENSMUST00000064853.13
      Conserved Domains (1) summary
      pfam15391
      Location:455 → 608
      DUF4614; Domain of unknown function (DUF4614)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      73197724..73214385
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006509750.4 → XP_006509813.1  uncharacterized protein C19orf44 homolog isoform X2

      Conserved Domains (2) summary
      pfam04388
      Location:69 → 177
      Hamartin; Hamartin protein
      pfam15391
      Location:149 → 302
      DUF4614; Domain of unknown function (DUF4614)

    2. XM_011242328.4 → XP_011240630.1  uncharacterized protein C19orf44 homolog isoform X1

      UniProtKB/TrEMBL
      E9Q7C0
      Conserved Domains (1) summary
      pfam15391
      Location:484 → 637
      DUF4614; Domain of unknown function (DUF4614)

    RNA

    1. XR_870463.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q922C1.2 GenPept UniProtKB/Swiss-Prot:Q922C1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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