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    Hpcal4 hippocalcin-like 4 [ Mus musculus (house mouse) ]

    Gene ID: 170638, updated on 23-Jun-2021

    Summary

    Official Symbol
    Hpcal4provided by MGI
    Official Full Name
    hippocalcin-like 4provided by MGI
    Primary source
    MGI:MGI:2157521
    See related
    Ensembl:ENSMUSG00000046093
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NVP-2; AI846570
    Expression
    Biased expression in frontal lobe adult (RPKM 155.7), cortex adult (RPKM 149.3) and 1 other tissue See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Hpcal4 in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (123077297..123088492)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (123183504..123194699)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (122860747..122871942)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein 8b Neighboring gene 3-oxoacid CoA transferase 2B Neighboring gene peptidylprolyl isomerase E (cyclophilin E) Neighboring gene 5'-nucleotidase, cytosolic IA Neighboring gene hairy/enhancer-of-split related with YRPW motif-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables calcium channel regulator activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein C-terminus binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    hippocalcin-like protein 4
    Names
    neural visinin-like protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174998.4NP_778163.1  hippocalcin-like protein 4

      See identical proteins and their annotated locations for NP_778163.1

      Status: PROVISIONAL

      Source sequence(s)
      AL606934
      Consensus CDS
      CCDS18611.1
      UniProtKB/Swiss-Prot
      Q8BGZ1
      UniProtKB/TrEMBL
      B2RRY8
      Related
      ENSMUSP00000051487.3, ENSMUST00000059667.9
      Conserved Domains (1) summary
      COG5126
      Location:13181
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      123077297..123088492
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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