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    Cmtm4 CKLF-like MARVEL transmembrane domain containing 4 [ Mus musculus (house mouse) ]

    Gene ID: 97487, updated on 11-Apr-2024

    Summary

    Official Symbol
    Cmtm4provided by MGI
    Official Full Name
    CKLF-like MARVEL transmembrane domain containing 4provided by MGI
    Primary source
    MGI:MGI:2142888
    See related
    Ensembl:ENSMUSG00000096188 AllianceGenome:MGI:2142888
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm9853; Cklfsf4
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in alimentary system; nose; and urinary system. Orthologous to human CMTM4 (CKLF like MARVEL transmembrane domain containing 4). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in colon adult (RPKM 23.3), kidney adult (RPKM 13.2) and 27 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Cmtm4 in Genome Data Viewer
    Location:
    8 D3; 8 53.04 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (105074823..105122439, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (104348191..104395807, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene CKLF-like MARVEL transmembrane domain containing 2B Neighboring gene CKLF-like MARVEL transmembrane domain containing 3 Neighboring gene dynein, cytoplasmic 1 light intermediate chain 2 Neighboring gene STARR-positive B cell enhancer ABC_E11745 Neighboring gene telomere repeat binding bouquet formation protein 1 Neighboring gene predicted gene, 22148

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Clone Names

    • MGC30490, MGC32180

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    CKLF-like MARVEL transmembrane domain-containing protein 4
    Names
    chemokine-like factor super family 4
    chemokine-like factor superfamily member 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153582.5NP_705810.2  CKLF-like MARVEL transmembrane domain-containing protein 4

      See identical proteins and their annotated locations for NP_705810.2

      Status: VALIDATED

      Source sequence(s)
      AC121952, BE952164, CJ104384
      Consensus CDS
      CCDS22578.1
      UniProtKB/Swiss-Prot
      Q8CJ61, Q8K143
      Related
      ENSMUSP00000137332.2, ENSMUST00000179802.2
      Conserved Domains (1) summary
      pfam01284
      Location:49170
      MARVEL; Membrane-associating domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      105074823..105122439 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)