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    Fam171a2 family with sequence similarity 171, member A2 [ Mus musculus (house mouse) ]

    Gene ID: 217219, updated on 23-Jun-2021

    Summary

    Official Symbol
    Fam171a2provided by MGI
    Official Full Name
    family with sequence similarity 171, member A2provided by MGI
    Primary source
    MGI:MGI:2448496
    See related
    Ensembl:ENSMUSG00000034685
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Broad expression in whole brain E14.5 (RPKM 63.7), CNS E18 (RPKM 59.6) and 16 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fam171a2 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (102327807..102338551, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (102436981..102447677, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (102298295..102308977, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 25, member 39 Neighboring gene microRNA 6930 Neighboring gene granulin Neighboring gene integrin alpha 2b Neighboring gene G patch domain containing 8 Neighboring gene cytochrome b-c1 complex subunit 10 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199200.2NP_954670.2  protein FAM171A2 precursor

      See identical proteins and their annotated locations for NP_954670.2

      Status: VALIDATED

      Source sequence(s)
      AL596258, CB182176, CB202938, CJ162493
      Consensus CDS
      CCDS36344.1
      UniProtKB/Swiss-Prot
      A2A699
      Related
      ENSMUSP00000038486.5, ENSMUST00000049057.5
      Conserved Domains (1) summary
      pfam10577
      Location:41820
      UPF0560; uncharacterized protein family UPF0560

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      102327807..102338551 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006533049.5XP_006533112.1  protein FAM171A2 isoform X1

      Conserved Domains (1) summary
      pfam10577
      Location:41813
      UPF0560; Uncharacterized protein family UPF0560
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