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    Prrt3 proline-rich transmembrane protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 210673, updated on 23-Jun-2021

    Summary

    Official Symbol
    Prrt3provided by MGI
    Official Full Name
    proline-rich transmembrane protein 3provided by MGI
    Primary source
    MGI:MGI:2444810
    See related
    Ensembl:ENSMUSG00000045009
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6330505P20; B230206N24Rik
    Expression
    Biased expression in cortex adult (RPKM 8.5), cerebellum adult (RPKM 8.3) and 6 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Prrt3 in Genome Data Viewer
    Location:
    6; 6 E3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113470599..113479071, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113493638..113502082, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (113444089..113451812, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene interleukin 17 receptor C Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene ER membrane protein complex subunit 3 Neighboring gene Fanconi anemia, complementation group D2 Neighboring gene predicted gene, 46971

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    proline-rich transmembrane protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289699.1NP_001276628.1  proline-rich transmembrane protein 3 isoform a precursor

      See identical proteins and their annotated locations for NP_001276628.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AC153910, AK031947, AK136854
      Consensus CDS
      CCDS85122.1
      UniProtKB/TrEMBL
      A0A0N4SVB5
      Related
      ENSMUSP00000145443.2, ENSMUST00000204268.3
      Conserved Domains (1) summary
      PHA03247
      Location:64464
      PHA03247; large tegument protein UL36; Provisional
    2. NM_001289700.1NP_001276629.1  proline-rich transmembrane protein 3 isoform a precursor

      See identical proteins and their annotated locations for NP_001276629.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same isoform (a).
      Source sequence(s)
      AC153910, AK031947, AK136854, BC058349
      Consensus CDS
      CCDS85122.1
      UniProtKB/Swiss-Prot
      Q6PE13
      UniProtKB/TrEMBL
      A0A0N4SVB5
      Related
      ENSMUSP00000145031.2, ENSMUST00000204134.3
      Conserved Domains (1) summary
      PHA03247
      Location:64464
      PHA03247; large tegument protein UL36; Provisional
    3. NM_172487.4NP_766075.2  proline-rich transmembrane protein 3 isoform b precursor

      See identical proteins and their annotated locations for NP_766075.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR and uses an alternate in-frame splice site, compared to variant 1. The encoded isoform (b) is shorter than isoform 1.
      Source sequence(s)
      AC153910, AK136854, BC058349
      Consensus CDS
      CCDS20424.1
      UniProtKB/Swiss-Prot
      Q6PE13
      Related
      ENSMUSP00000098620.2, ENSMUST00000101059.4
      Conserved Domains (2) summary
      PHA03247
      Location:64463
      PHA03247; large tegument protein UL36; Provisional
      PRK07764
      Location:273447
      PRK07764; DNA polymerase III subunits gamma and tau; Validated

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      113470599..113479071 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030255299.2XP_030111159.1  proline-rich transmembrane protein 3 isoform X2

      Conserved Domains (2) summary
      PHA03247
      Location:64463
      PHA03247; large tegument protein UL36; Provisional
      PRK07764
      Location:273447
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
    2. XM_006505843.5XP_006505906.1  proline-rich transmembrane protein 3 isoform X2

      See identical proteins and their annotated locations for XP_006505906.1

      UniProtKB/Swiss-Prot
      Q6PE13
      Conserved Domains (2) summary
      PHA03247
      Location:64463
      PHA03247; large tegument protein UL36; Provisional
      PRK07764
      Location:273447
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
    3. XM_011241275.2XP_011239577.1  proline-rich transmembrane protein 3 isoform X1

      See identical proteins and their annotated locations for XP_011239577.1

      UniProtKB/TrEMBL
      A0A0N4SVB5
      Conserved Domains (1) summary
      PHA03247
      Location:64464
      PHA03247; large tegument protein UL36; Provisional
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