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    Atp6v1d ATPase, H+ transporting, lysosomal V1 subunit D [ Mus musculus (house mouse) ]

    Gene ID: 73834, updated on 29-Jun-2021

    Summary

    Official Symbol
    Atp6v1dprovided by MGI
    Official Full Name
    ATPase, H+ transporting, lysosomal V1 subunit Dprovided by MGI
    Primary source
    MGI:MGI:1921084
    See related
    Ensembl:ENSMUSG00000021114
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    VA; Vm; Atp; VATD; Vma8; Atp6m; 1110004P10Rik
    Expression
    Broad expression in cortex adult (RPKM 56.2), frontal lobe adult (RPKM 53.1) and 22 other tissues See more
    Orthologs
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    Genomic context

    See Atp6v1d in Genome Data Viewer
    Location:
    12 C3; 12 35.51 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (78889756..78908810, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (78842982..78862008, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (79943969..79962625, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 71, member D Neighboring gene protein associated with LIN7 1, MAGUK family member Neighboring gene eukaryotic translation initiation factor 2, subunit 1 alpha Neighboring gene pleckstrin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (3) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATPase-coupled transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables proton-transporting ATPase activity, rotational mechanism IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell projection organization IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in protein localization to cilium ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    colocalizes_with centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with cilium ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of proton-transporting V-type ATPase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of proton-transporting V-type ATPase complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    V-type proton ATPase subunit D
    Names
    ATPase, H+ transporting lysosomal (vacuolar proton pump)
    ATPase, H+ transporting, V1 subunit D
    ATPase, H+ transporting, lysosomal 34kD, V1 subunit D
    V-ATPase 28 kDa accessory protein
    V-ATPase subunit D
    lysosomal 34kDa
    vacuolar proton pump subunit D
    NP_076210.1
    XP_030102816.1
    XP_036013525.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_023721.2NP_076210.1  V-type proton ATPase subunit D

      See identical proteins and their annotated locations for NP_076210.1

      Status: VALIDATED

      Source sequence(s)
      AK147910, BY096594
      Consensus CDS
      CCDS26002.1
      UniProtKB/Swiss-Prot
      P57746
      UniProtKB/TrEMBL
      Q3U861
      Related
      ENSMUSP00000021536.8, ENSMUST00000021536.9
      Conserved Domains (1) summary
      pfam01813
      Location:17202
      ATP-synt_D; ATP synthase subunit D

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      78889756..78908810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157632.1XP_036013525.1  V-type proton ATPase subunit D isoform X2

      Conserved Domains (1) summary
      pfam01813
      Location:1184
      ATP-synt_D; ATP synthase subunit D
    2. XM_030246956.2XP_030102816.1  V-type proton ATPase subunit D isoform X1

      Conserved Domains (1) summary
      pfam01813
      Location:17202
      ATP-synt_D; ATP synthase subunit D
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