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    Vmn2r84 vomeronasal 2, receptor 84 [ Mus musculus (house mouse) ]

    Gene ID: 625068, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Vmn2r84provided by MGI
    Official Full Name
    vomeronasal 2, receptor 84provided by MGI
    Primary source
    MGI:MGI:3643367
    See related
    Ensembl:ENSMUSG00000070601 AllianceGenome:MGI:3643367
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG625068
    Summary
    Predicted to enable G protein-coupled receptor activity. Predicted to be integral component of plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in cortex adult (RPKM 2.2), frontal lobe adult (RPKM 1.2) and 4 other tissues See more
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    Genomic context

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    See Vmn2r84 in Genome Data Viewer
    Location:
    10 D3; 10 77.88 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (130221669..130230110, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (130385800..130394241, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E9814 Neighboring gene neurogenic differentiation 4 Neighboring gene STARR-seq mESC enhancer starr_28332 Neighboring gene STARR-positive B cell enhancer mm9_chr10:129735744-129736044 Neighboring gene STARR-positive B cell enhancer ABC_E8379 Neighboring gene STARR-positive B cell enhancer ABC_E11762 Neighboring gene thymocyte expressed, positive selection associated 1 Neighboring gene STARR-positive B cell enhancer mm9_chr10:129774366-129774667 Neighboring gene STARR-positive B cell enhancer mm9_chr10:129800808-129801109 Neighboring gene STARR-seq mESC enhancer starr_28333 Neighboring gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2, pseudogene Neighboring gene STARR-seq mESC enhancer starr_28334 Neighboring gene vomeronasal 2, receptor 85

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables G protein-coupled receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    vomeronasal receptor Vmn2r84

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081448.1 → NP_001074917.1  vomeronasal receptor Vmn2r84 precursor

      See identical proteins and their annotated locations for NP_001074917.1

      Status: INFERRED

      Source sequence(s)
      AC159473
      Consensus CDS
      CCDS36093.1
      UniProtKB/TrEMBL
      A0A3B2WBK8, D3YWE3
      Related
      ENSMUSP00000092079.5, ENSMUST00000094502.6
      Conserved Domains (3) summary
      cd06365
      Location:40 → 500
      PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
      pfam00003
      Location:595 → 829
      7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
      pfam07562
      Location:509 → 560
      NCD3G; Nine Cysteines Domain of family 3 GPCR

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      130221669..130230110 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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