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    Gm40438 predicted gene, 40438 [ Mus musculus (house mouse) ]

    Gene ID: 105244916, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm40438provided by MGI
    Official Full Name
    predicted gene, 40438provided by MGI
    Primary source
    MGI:MGI:5623323
    See related
    AllianceGenome:MGI:5623323
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in liver adult (RPKM 2.7) and liver E18 (RPKM 0.2) See more
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    Genomic context

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    Location:
    12 C3; 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (71402204..71408851)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (71355430..71362077)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene dishevelled-binding antagonist of beta-catenin 1 Neighboring gene predicted gene, 33016 Neighboring gene RIKEN cDNA 1700083H02 gene Neighboring gene STARR-seq mESC enhancer starr_32419 Neighboring gene STARR-seq mESC enhancer starr_32421 Neighboring gene calponin 3, acidic pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      71402204..71408851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_872804.2 RNA Sequence

    2. XR_872805.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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