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    Cdr1os cerebellar degeneration related antigen 1, opposite strand [ Mus musculus (house mouse) ]

    Gene ID: 331424, updated on 26-Feb-2024

    Summary

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    Official Symbol
    Cdr1osprovided by MGI
    Official Full Name
    cerebellar degeneration related antigen 1, opposite strandprovided by MGI
    Primary source
    MGI:MGI:5637821
    See related
    Ensembl:ENSMUSG00000071753 AllianceGenome:MGI:5637821
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cdr1as; C230004F18Rik
    Summary
    Is expressed in several structures, including adipose tissue; adrenal gland; central nervous system; gut; and trigeminal nerve. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in cerebellum adult (RPKM 5.1), frontal lobe adult (RPKM 4.2) and 6 other tissues See more
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    Genomic context

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    Location:
    X A6; X 34.19 cM
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (60159984..60247391)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (61116378..61139460)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted gene 14664 Neighboring gene estrogen related receptor, beta pseudogene Neighboring gene cerebellar degeneration related antigen 1 Neighboring gene predicted gene 4988 Neighboring gene STARR-seq mESC enhancer starr_47247 Neighboring gene NudC domain containing 2 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Abundant Neural circRNA Cdr1as Is Not Indispensable for Retina Maintenance. Chen XJ, et al. Front Cell Dev Biol, 2020. PMID 33240875, Free PMC Article
    2. ciRS-7 exonic sequence is embedded in a long non-coding RNA locus. Barrett SP, et al. PLoS Genet, 2017 Dec. PMID 29236709, Free PMC Article
    3. A Network of Noncoding Regulatory RNAs Acts in the Mammalian Brain. Kleaveland B, et al. Cell, 2018 Jul 12. PMID 29887379, Free PMC Article
    4. Circular RNAs are a large class of animal RNAs with regulatory potency. Memczak S, et al. Nature, 2013 Mar 21. PMID 23446348
    5. Loss of a mammalian circular RNA locus causes miRNA deregulation and affects brain function. Piwecka M, et al. Science, 2017 Sep 22. PMID 28798046

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Exosomes From IgE-Stimulated Mast Cells Aggravate Asthma-Mediated Atherosclerosis Through circRNA CDR1as-Mediated Endothelial Cell Dysfunction in Mice.
      Title: Exosomes From IgE-Stimulated Mast Cells Aggravate Asthma-Mediated Atherosclerosis Through circRNA CDR1as-Mediated Endothelial Cell Dysfunction in Mice.
    2. Circular RNA Cdr1as inhibits proliferation and delays injury-induced regeneration of the intestinal epithelium.
      Title: Circular RNA Cdr1as inhibits proliferation and delays injury-induced regeneration of the intestinal epithelium.
    Submit: New GeneRIF Correction

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_030706.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK082088, AK163488, BB653348
      Related
      ENSMUST00000125930.9

    2. NR_173098.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000232525.2

    3. NR_173099.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000231449.2

    4. NR_173100.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000137153.8

    5. NR_173101.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000144853.9

    6. NR_173102.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656

    7. NR_173103.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000232283.2

    8. NR_173104.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000140023.8

    9. NR_173105.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BX322656
      Related
      ENSMUST00000232057.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      60159984..60247391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177916.2: Suppressed sequence

      Description
      NM_177916.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.