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    Mir9-2hg Mir9-2 host gene [ Mus musculus (house mouse) ]

    Gene ID: 320203, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Mir9-2hgprovided by MGI
    Official Full Name
    Mir9-2 host geneprovided by MGI
    Primary source
    MGI:MGI:2443574
    See related
    Ensembl:ENSMUSG00000050334 AllianceGenome:MGI:2443574
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Visc-1; ECONEXIN; EyeLinc1; 2810449C10Rik; C130071C03Rik
    Summary
    Is expressed in several structures, including integumental system; limb; liver; metanephros; and nervous system. Orthologous to human LINC00461 (long intergenic non-protein coding RNA 461). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in CNS E18 (RPKM 2.7), CNS E14 (RPKM 2.2) and 5 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Mir9-2hg in Genome Data Viewer
    Location:
    13 C3; 13 43.68 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (83869500..83889427)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (83721381..83741308)

    Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33274 Neighboring gene STARR-positive B cell enhancer ABC_E5408 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83664236-83664536 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83666025-83666326 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83678903-83679204 Neighboring gene myocyte enhancer factor 2C Neighboring gene STARR-positive B cell enhancer ABC_E8895 Neighboring gene VISTA enhancer mm1175 Neighboring gene STARR-positive B cell enhancer ABC_E747 Neighboring gene predicted gene, 26803 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83788426-83788726 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83789544-83789845 Neighboring gene STARR-positive B cell enhancer mm9_chr13:83790286-83790587 Neighboring gene STARR-positive B cell enhancer ABC_E10805 Neighboring gene STARR-seq mESC enhancer starr_35152 Neighboring gene STARR-seq mESC enhancer starr_35153 Neighboring gene microRNA 9b-2 Neighboring gene microRNA 9-2 Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_35158 Neighboring gene lactate dehydrogenase A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. LINC00461, a long non-coding RNA, is important for the proliferation and migration of glioma cells. Yang Y, et al. Oncotarget, 2017 Oct 13. PMID 29137410, Free PMC Article
    2. Oncogenic effects of evolutionarily conserved noncoding RNA ECONEXIN on gliomagenesis. Deguchi S, et al. Oncogene, 2017 Aug 10. PMID 28368417
    3. Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype. Oliver PL, et al. Cereb Cortex, 2015 Oct. PMID 25209608, Free PMC Article
    4. Evolutionarily conserved long intergenic non-coding RNAs in the eye. Mustafi D, et al. Hum Mol Genet, 2013 Aug 1. PMID 23562822, Free PMC Article
    5. Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. Aboudehen K, et al. J Biol Chem, 2018 Jun 15. PMID 29716997, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_015561.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3, also known as Visc-3) differs at the 5' and 3' ends compared to variant 1.
      Source sequence(s)
      AK039679
      Related
      ENSMUST00000182788.2

    2. NR_152244.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and is also known as Visc-1a.
      Source sequence(s)
      BY244448, CU074400, KF032589
      Related
      ENSMUST00000244522.1

    3. NR_152245.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1 and is also known as Visc-1b.
      Source sequence(s)
      BY244448, CU074400, KF032590
      Related
      ENSMUST00000131907.10

    4. NR_152246.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CU074400
      Related
      ENSMUST00000243265.1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000079.7 Reference GRCm39 C57BL/6J

      Range
      83869500..83889427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177100.2: Suppressed sequence

      Description
      NM_177100.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.