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    C1ql3 C1q-like 3 [ Mus musculus (house mouse) ]

    Gene ID: 227580, updated on 13-Jul-2021

    Summary

    Official Symbol
    C1ql3provided by MGI
    Official Full Name
    C1q-like 3provided by MGI
    Primary source
    MGI:MGI:2387350
    See related
    Ensembl:ENSMUSG00000049630
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Adij; C1ql; K100; CTRP13; AI661623; C1qtnf13; 1110065A22Rik
    Expression
    Biased expression in frontal lobe adult (RPKM 21.1), cortex adult (RPKM 17.2) and 6 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See C1ql3 in Genome Data Viewer
    Location:
    2; 2 A1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (13006698..13015675, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (13001887..13010864, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (12923514..12932491, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene 13321 Neighboring gene phosphotriesterase related Neighboring gene predicted gene, 52597 Neighboring gene Ras suppressor protein 1 Neighboring gene predicted gene 13270 Neighboring gene cubilin (intrinsic factor-cobalamin receptor)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of synapse organization IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of collagen trimer IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular region IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    complement C1q-like protein 3
    Names
    C1q and tumor necrosis factor-related protein 13
    C1q/TNF-related protein 13
    adiponectin j
    gliacolin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153155.2NP_694795.1  complement C1q-like protein 3 precursor

      See identical proteins and their annotated locations for NP_694795.1

      Status: VALIDATED

      Source sequence(s)
      AB044560, AL929209
      Consensus CDS
      CCDS15692.1
      UniProtKB/Swiss-Prot
      Q9ESN4
      Related
      ENSMUSP00000056188.6, ENSMUST00000061545.7
      Conserved Domains (1) summary
      pfam00386
      Location:128252
      C1q; C1q domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      13006698..13015675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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