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    Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase 1 [ Mus musculus (house mouse) ]

    Gene ID: 18537, updated on 11-Apr-2024

    Summary

    Official Symbol
    Pcmt1provided by MGI
    Official Full Name
    protein-L-isoaspartate (D-aspartate) O-methyltransferase 1provided by MGI
    Primary source
    MGI:MGI:97502
    See related
    Ensembl:ENSMUSG00000019795 AllianceGenome:MGI:97502
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PIMT
    Summary
    Enables protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Acts upstream of or within protein methylation. Predicted to be located in several cellular components, including basolateral plasma membrane; brush border membrane; and perikaryon. Predicted to be active in cytoplasm. Orthologous to human PCMT1 (protein-L-isoaspartate (D-aspartate) O-methyltransferase). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 29.8), cerebellum adult (RPKM 17.1) and 27 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Pcmt1 in Genome Data Viewer
    Location:
    10 A1; 10 2.26 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (7503608..7556922, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (7627845..7681337, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene UL16 binding protein 1 Neighboring gene predicted gene, 46209 Neighboring gene STARR-positive B cell enhancer ABC_E3874 Neighboring gene STARR-seq mESC enhancer starr_25682 Neighboring gene predicted gene 16254 Neighboring gene low density lipoprotein receptor-related protein 11 Neighboring gene RIKEN cDNA A630066F11 gene Neighboring gene STARR-positive B cell enhancer ABC_E3875 Neighboring gene nucleoporin 43 Neighboring gene large tumor suppressor Neighboring gene STARR-seq mESC enhancer starr_25689 Neighboring gene STARR-positive B cell enhancer ABC_E6817 Neighboring gene katanin p60 (ATPase-containing) subunit A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (3) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in S-adenosylhomocysteine metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in S-adenosylmethionine metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within methylation IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of cardiac muscle cell apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within protein methylation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in protein methylation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein modification process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in basolateral plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    located_in brush border membrane ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    located_in perikaryon ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    protein-L-isoaspartate(D-aspartate) O-methyltransferase
    Names
    L-isoaspartyl protein carboxyl methyltransferase
    protein L-isoaspartyl/D-aspartyl methyltransferase
    protein carboxyl methyltransferase
    protein-beta-aspartate methyltransferase
    NP_001334157.2
    NP_001345576.2
    NP_001345578.1
    NP_001345580.1
    NP_001345581.1
    NP_001345582.1
    NP_001345583.1
    NP_001345586.1
    NP_001394120.1
    NP_001394121.1
    NP_001394122.1
    NP_001394123.1
    NP_001394124.1
    NP_001394125.1
    NP_001394126.1
    NP_001394127.1
    NP_001394128.1
    NP_001394129.1
    NP_001394130.1
    NP_001394131.1
    NP_001394132.1
    NP_001394133.1
    NP_001394134.1
    NP_001394135.1
    NP_001394138.1
    NP_001394139.1
    NP_001394140.1
    NP_001394141.1
    NP_001394142.1
    NP_001394144.1
    NP_001394145.1
    NP_001394146.1
    NP_001394147.1
    NP_001394148.1
    NP_001394149.1
    NP_001394150.1
    NP_001394156.1
    NP_001394157.1
    NP_001394158.1
    NP_001394159.1
    NP_001394160.1
    NP_001394161.1
    NP_001394162.1
    NP_001394163.1
    NP_001394164.1
    NP_001394165.1
    NP_001394166.1
    NP_001394177.1
    NP_001394178.1
    NP_001394179.1
    NP_001394180.1
    NP_001394181.1
    NP_001394182.1
    NP_001394183.1
    NP_001399029.1
    NP_032812.3
    XP_036011569.1
    XP_036011570.1
    XP_036011571.1
    XP_036011572.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347228.5NP_001334157.2  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC156391
      Consensus CDS
      CCDS83677.1
      Related
      ENSMUSP00000123866.3, ENSMUST00000162606.8
    2. NM_001358647.3NP_001345576.2  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC156391
    3. NM_001358649.2NP_001345578.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC156391
      UniProtKB/TrEMBL
      Q8BPI6
      Conserved Domains (1) summary
      pfam01135
      Location:10206
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    4. NM_001358651.2NP_001345580.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
      UniProtKB/TrEMBL
      Q8BPI6
      Conserved Domains (1) summary
      pfam01135
      Location:1190
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    5. NM_001358652.2NP_001345581.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC156391
      UniProtKB/TrEMBL
      Q8BPI6
      Conserved Domains (1) summary
      pfam01135
      Location:1190
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    6. NM_001358653.2NP_001345582.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC156391
      UniProtKB/TrEMBL
      Q8BPI6
      Conserved Domains (1) summary
      pfam01135
      Location:1190
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    7. NM_001358654.2NP_001345583.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC156391
      Conserved Domains (1) summary
      pfam01135
      Location:1153
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    8. NM_001358657.2NP_001345586.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
      Conserved Domains (1) summary
      pfam01135
      Location:1153
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    9. NM_001407191.1NP_001394120.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC156391
    10. NM_001407192.1NP_001394121.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 16

      Status: VALIDATED

      Source sequence(s)
      AC156391
    11. NM_001407193.1NP_001394122.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 10

      Status: VALIDATED

      Source sequence(s)
      AC156391
    12. NM_001407194.1NP_001394123.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 10

      Status: VALIDATED

      Source sequence(s)
      AC156391
    13. NM_001407195.1NP_001394124.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
    14. NM_001407196.1NP_001394125.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
    15. NM_001407197.1NP_001394126.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC156391
    16. NM_001407198.1NP_001394127.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC156391
    17. NM_001407199.1NP_001394128.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC156391
    18. NM_001407200.1NP_001394129.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
    19. NM_001407201.1NP_001394130.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
    20. NM_001407202.1NP_001394131.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 23

      Status: VALIDATED

      Source sequence(s)
      AC156391
    21. NM_001407203.1NP_001394132.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 28

      Status: VALIDATED

      Source sequence(s)
      AC156391
    22. NM_001407204.1NP_001394133.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 24

      Status: VALIDATED

      Source sequence(s)
      AC156391
    23. NM_001407205.1NP_001394134.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 12

      Status: VALIDATED

      Source sequence(s)
      AC156391
    24. NM_001407206.1NP_001394135.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 31

      Status: VALIDATED

      Source sequence(s)
      AC156391
    25. NM_001407209.1NP_001394138.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 29

      Status: VALIDATED

      Source sequence(s)
      AC156391
    26. NM_001407210.1NP_001394139.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 25

      Status: VALIDATED

      Source sequence(s)
      AC156391
    27. NM_001407211.1NP_001394140.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 21

      Status: VALIDATED

      Source sequence(s)
      AC156391
    28. NM_001407212.1NP_001394141.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 17

      Status: VALIDATED

      Source sequence(s)
      AC156391
    29. NM_001407213.1NP_001394142.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 15

      Status: VALIDATED

      Source sequence(s)
      AC156391
    30. NM_001407215.1NP_001394144.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 11

      Status: VALIDATED

      Source sequence(s)
      AC156391
    31. NM_001407216.1NP_001394145.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
    32. NM_001407217.1NP_001394146.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
    33. NM_001407218.1NP_001394147.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC156391
    34. NM_001407219.1NP_001394148.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC156391
    35. NM_001407220.1NP_001394149.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 20

      Status: VALIDATED

      Source sequence(s)
      AC156391
    36. NM_001407221.1NP_001394150.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 20

      Status: VALIDATED

      Source sequence(s)
      AC156391
    37. NM_001407227.1NP_001394156.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 22

      Status: VALIDATED

      Source sequence(s)
      AC156391
    38. NM_001407228.1NP_001394157.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 22

      Status: VALIDATED

      Source sequence(s)
      AC156391
    39. NM_001407229.1NP_001394158.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
    40. NM_001407230.1NP_001394159.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
    41. NM_001407231.1NP_001394160.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
    42. NM_001407232.1NP_001394161.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
    43. NM_001407233.1NP_001394162.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC156391
    44. NM_001407234.1NP_001394163.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC156391
    45. NM_001407235.1NP_001394164.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 6

      Status: VALIDATED

      Source sequence(s)
      AC156391
    46. NM_001407236.1NP_001394165.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 28

      Status: VALIDATED

      Source sequence(s)
      AC156391
    47. NM_001407237.1NP_001394166.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 28

      Status: VALIDATED

      Source sequence(s)
      AC156391
    48. NM_001407248.1NP_001394177.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 13

      Status: VALIDATED

      Source sequence(s)
      AC156391
    49. NM_001407249.1NP_001394178.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 14

      Status: VALIDATED

      Source sequence(s)
      AC156391
    50. NM_001407250.1NP_001394179.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC156391
    51. NM_001407251.1NP_001394180.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 18

      Status: VALIDATED

      Source sequence(s)
      AC156391
    52. NM_001407252.1NP_001394181.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 19

      Status: VALIDATED

      Source sequence(s)
      AC156391
    53. NM_001407253.1NP_001394182.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 26

      Status: VALIDATED

      Source sequence(s)
      AC156391
    54. NM_001407254.1NP_001394183.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 27

      Status: VALIDATED

      Source sequence(s)
      AC156391
    55. NM_001412100.1NP_001399029.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 30

      Status: VALIDATED

      Source sequence(s)
      AC156391
      Related
      ENSMUSP00000123758.2, ENSMUST00000161428.8
    56. NM_008786.6NP_032812.3  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC156391
      Consensus CDS
      CCDS23687.2
      UniProtKB/Swiss-Prot
      P23506, Q810R4
      UniProtKB/TrEMBL
      Q545L9
      Related
      ENSMUSP00000124932.3, ENSMUST00000159917.8

    RNA

    1. NR_176302.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    2. NR_176303.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    3. NR_176304.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    4. NR_176305.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    5. NR_176306.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    6. NR_176307.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    7. NR_176308.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    8. NR_176309.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    9. NR_176310.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    10. NR_176311.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    11. NR_176312.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    12. NR_176313.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    13. NR_176314.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    14. NR_176315.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391
    15. NR_176316.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156391

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      7503608..7556922 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036155676.1XP_036011569.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X5

      Conserved Domains (1) summary
      pfam01135
      Location:1153
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    2. XM_036155679.1XP_036011572.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X5

      Conserved Domains (1) summary
      pfam01135
      Location:1153
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    3. XM_036155677.1XP_036011570.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X5

      Conserved Domains (1) summary
      pfam01135
      Location:1153
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
    4. XM_036155678.1XP_036011571.1  protein-L-isoaspartate(D-aspartate) O-methyltransferase isoform X5

      Conserved Domains (1) summary
      pfam01135
      Location:1153
      PCMT; Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_033219.1: Suppressed sequence

      Description
      NR_033219.1: This RefSeq was removed because the gene was discontinued.