U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam236f family with sequence similarity 236, member F [ Mus musculus (house mouse) ]

    Gene ID: 668339, updated on 8-Feb-2024

    Summary

    Official Symbol
    Fam236fprovided by MGI
    Official Full Name
    family with sequence similarity 236, member Fprovided by MGI
    Primary source
    MGI:MGI:3645559
    See related
    Ensembl:ENSMUSG00000079479 AllianceGenome:MGI:3645559
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm9112; EG668339
    Summary
    Orthologous to human FAM236A (family with sequence similarity 235 member A); FAM236B (family with sequence similarity 236 member B); and FAM236D (family with sequence similarity 236 member D). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in placenta adult (RPKM 15.7) and testis adult (RPKM 14.4) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fam236f in Genome Data Viewer
    Location:
    X D; X 45.66 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (101750494..101751276, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (102706888..102707670, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene transcriptional adaptor 3 pseudogene Neighboring gene high mobility group box 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47676 Neighboring gene DMRT-like family C1b Neighboring gene STARR-seq mESC enhancer starr_47677 Neighboring gene ornithine decarboxylase, structural 1 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC668339

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177365.1NP_001170836.1  uncharacterized protein LOC668339

      Status: VALIDATED

      Source sequence(s)
      CJ042093, CJ042401
      Consensus CDS
      CCDS53157.1
      UniProtKB/TrEMBL
      A2AI92
      Related
      ENSMUSP00000109240.3, ENSMUST00000113610.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      101750494..101751276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)