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    COL12A1 collagen type XII alpha 1 chain [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 717820, updated on 5-Mar-2024

    Summary

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    Official Symbol
    COL12A1provided by VGNC
    Official Full Name
    collagen type XII alpha 1 chainprovided by VGNC
    Primary source
    VGNC:VGNC:71291
    See related
    Ensembl:ENSMMUG00000019261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    67
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 4 NC_041757.1 (97809646..97937950)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 4 NC_027896.1 (73190095..73317229, complement)

    Chromosome 4 - NC_041757.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 30A Neighboring gene cytochrome c oxidase subunit 7A2, mitochondrial Neighboring gene uncharacterized LOC114677563 Neighboring gene protein FAM136A pseudogene Neighboring gene protein FAM117A pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endodermal cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    collagen alpha-1(XII) chain

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041757.1 Reference Mmul_10 Primary Assembly

      Range
      97809646..97937950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015136785.2 → XP_014992271.2  collagen alpha-1(XII) chain isoform X1

      Conserved Domains (6) summary
      pfam01391
      Location:2765 → 2891
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:1474 → 1548
      FN3; Fibronectin type 3 domain
      smart00210
      Location:2520 → 2712
      TSPN; Thrombospondin N-terminal -like domains
      cd00063
      Location:2118 → 2197
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd01482
      Location:1198 → 1361
      vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
      pfam00041
      Location:1756 → 1834
      fn3; Fibronectin type III domain

    2. XM_015136788.2 → XP_014992274.2  collagen alpha-1(XII) chain isoform X3

      UniProtKB/TrEMBL
      A0A1D5R0G2
      Related
      ENSMMUP00000053795.2, ENSMMUT00000060955.2
      Conserved Domains (6) summary
      pfam01391
      Location:1705 → 1733
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:310 → 384
      FN3; Fibronectin type 3 domain
      smart00210
      Location:1356 → 1548
      TSPN; Thrombospondin N-terminal -like domains
      cd00063
      Location:954 → 1033
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd01482
      Location:34 → 197
      vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
      pfam00041
      Location:592 → 670
      fn3; Fibronectin type III domain

    3. XM_015136786.2 → XP_014992272.2  collagen alpha-1(XII) chain isoform X2

      UniProtKB/TrEMBL
      F6SIX4
      Related
      ENSMMUP00000025312.4, ENSMMUT00000027056.4
      Conserved Domains (6) summary
      pfam01391
      Location:2765 → 2891
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:1474 → 1548
      FN3; Fibronectin type 3 domain
      smart00210
      Location:2520 → 2712
      TSPN; Thrombospondin N-terminal -like domains
      cd00063
      Location:2118 → 2197
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd01482
      Location:1198 → 1361
      vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
      pfam00041
      Location:1756 → 1834
      fn3; Fibronectin type III domain

    4. XM_015136789.2 → XP_014992275.2  collagen alpha-1(XII) chain isoform X4

      UniProtKB/TrEMBL
      A0A1D5R0G2
      Conserved Domains (6) summary
      pfam01391
      Location:1601 → 1727
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:310 → 384
      FN3; Fibronectin type 3 domain
      smart00210
      Location:1356 → 1548
      TSPN; Thrombospondin N-terminal -like domains
      cd00063
      Location:954 → 1033
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd01482
      Location:34 → 197
      vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
      pfam00041
      Location:592 → 670
      fn3; Fibronectin type III domain

    5. XM_028847410.1 → XP_028703243.1  collagen alpha-1(XII) chain isoform X1

      Conserved Domains (6) summary
      pfam01391
      Location:2765 → 2891
      Collagen; Collagen triple helix repeat (20 copies)
      smart00060
      Location:1474 → 1548
      FN3; Fibronectin type 3 domain
      smart00210
      Location:2520 → 2712
      TSPN; Thrombospondin N-terminal -like domains
      cd00063
      Location:2118 → 2197
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      cd01482
      Location:1198 → 1361
      vWA_collagen_alphaI-XII-like; Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different ...
      pfam00041
      Location:1756 → 1834
      fn3; Fibronectin type III domain

    RNA

    1. XR_003728917.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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