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    Snapc1 small nuclear RNA activating complex, polypeptide 1 [ Mus musculus (house mouse) ]

    Gene ID: 75627, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Snapc1provided by MGI
    Official Full Name
    small nuclear RNA activating complex, polypeptide 1provided by MGI
    Primary source
    MGI:MGI:1922877
    See related
    Ensembl:ENSMUSG00000021113 AllianceGenome:MGI:1922877
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2700033G17Rik; 9630050P21Rik
    Summary
    Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of snRNA-activating protein complex. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and respiratory system. Orthologous to human SNAPC1 (small nuclear RNA activating complex polypeptide 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 7.1), CNS E14 (RPKM 6.1) and 27 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Snapc1 in Genome Data Viewer
    Location:
    12 C3; 12 32.0 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (74011271..74035836)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (73964457..73988966)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene hypoxia inducible factor 1, alpha subunit Neighboring gene STARR-seq mESC enhancer starr_32480 Neighboring gene predicted gene 15283 Neighboring gene STARR-positive B cell enhancer ABC_E8489 Neighboring gene S100 calcium binding protein A11, pseudogene Neighboring gene synaptotagmin XVI Neighboring gene STARR-seq mESC enhancer starr_32482 Neighboring gene predicted gene, 40889 Neighboring gene RIKEN cDNA 1700086L19 gene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    2. GUDMAP: the genitourinary developmental molecular anatomy project. McMahon AP, et al. J Am Soc Nephrol, 2008 Apr. PMID 18287559
    3. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • 2700033G17Rik, 9630050P21Rik

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in snRNA transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in snRNA transcription by RNA polymerase III IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of snRNA-activating protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    snRNA-activating protein complex subunit 1
    Names
    SNAPc 43 kDa subunit
    SNAPc subunit 1
    snRNA-activating protein complex 43 kDa subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001418098.1 → NP_001405027.1  snRNA-activating protein complex subunit 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591

    2. NM_001418099.1 → NP_001405028.1  snRNA-activating protein complex subunit 1 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591

    3. NM_001418100.1 → NP_001405029.1  snRNA-activating protein complex subunit 1 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591

    4. NM_001418101.1 → NP_001405030.1  snRNA-activating protein complex subunit 1 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591

    5. NM_178392.6 → NP_848479.1  snRNA-activating protein complex subunit 1 isoform 1

      See identical proteins and their annotated locations for NP_848479.1

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591
      Consensus CDS
      CCDS25978.1
      UniProtKB/Swiss-Prot
      Q8K0S9
      Related
      ENSMUSP00000021532.5, ENSMUST00000021532.6
      Conserved Domains (1) summary
      pfam09808
      Location:26 → 210
      SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

    RNA

    1. NR_184683.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591

    2. NR_184684.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC124712, AC161591

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      74011271..74035836
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8K0S9.1 GenPept UniProtKB/Swiss-Prot:Q8K0S9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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