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    C10h5orf15 similar to human chromosome 5 open reading frame 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303122, updated on 13-Apr-2024

    Summary

    Official Symbol
    C10h5orf15provided by RGD
    Official Full Name
    similar to human chromosome 5 open reading frame 15provided by RGD
    Primary source
    RGD:1310352
    See related
    Ensembl:ENSRNOG00000006148 AllianceGenome:RGD:1310352
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310352
    Summary
    Predicted to be integral component of membrane. Orthologous to human C5orf15 (chromosome 5 open reading frame 15). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 575.9), Liver (RPKM 377.0) and 9 other tissues See more
    Orthologs
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    Genomic context

    Location:
    10q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (37064889..37077493)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (36563989..36576593)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (37757131..37769781)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene transcription factor 7 Neighboring gene voltage-dependent anion channel 1 Neighboring gene cytochrome b-c1 complex subunit 10-like Neighboring gene uncharacterized LOC102548512 Neighboring gene ribosomal protein S9, pseudogene 12

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    keratinocyte-associated transmembrane protein 2
    Names
    keratinocytes associated transmembrane protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106999.2NP_001100469.1  keratinocyte-associated transmembrane protein 2 precursor

      See identical proteins and their annotated locations for NP_001100469.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A6HEB0, D3ZQ77
      Related
      ENSRNOP00000008119.5, ENSRNOT00000008119.7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      37064889..37077493
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)