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    2410004P03Rik RIKEN cDNA 2410004P03 gene [ Mus musculus (house mouse) ]

    Gene ID: 73667, updated on 5-Mar-2024

    Summary

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    Official Symbol
    2410004P03Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2410004P03 geneprovided by MGI
    Primary source
    MGI:MGI:1920917
    See related
    Ensembl:ENSMUSG00000071398 AllianceGenome:MGI:1920917
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C2orf50 (chromosome 2 open reading frame 50). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in ovary adult (RPKM 6.4), lung adult (RPKM 5.4) and 6 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 2410004P03Rik in Genome Data Viewer
    Location:
    12 A1.1; 12 8.04 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (17054958..17061759, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (17004958..17011758, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene Rho-associated coiled-coil containing protein kinase 2 Neighboring gene predicted gene, 22303 Neighboring gene STARR-seq mESC enhancer starr_31651 Neighboring gene STARR-positive B cell enhancer ABC_E7121 Neighboring gene solute carrier family 66 member 3 Neighboring gene STARR-positive B cell enhancer ABC_E11504 Neighboring gene STARR-seq mESC enhancer starr_31652 Neighboring gene STARR-seq mESC enhancer starr_31653 Neighboring gene STARR-seq mESC enhancer starr_31654 Neighboring gene potassium voltage-gated channel, subfamily F, member 1 Neighboring gene predicted gene, 36568

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C2orf50 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001201332.2 → NP_001188261.1  uncharacterized protein C2orf50 homolog isoform 1

      See identical proteins and their annotated locations for NP_001188261.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript but encodes the shorter isoform (1).
      Source sequence(s)
      AC159312
      Consensus CDS
      CCDS49033.1
      UniProtKB/TrEMBL
      D3Z430
      Related
      ENSMUSP00000093503.3, ENSMUST00000095823.9
      Conserved Domains (1) summary
      pfam14945
      Location:53 → 96
      LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein

    2. NM_001201333.2 → NP_001188262.1  uncharacterized protein C2orf50 homolog isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon that results in a frameshift in the central and 3' coding regions, compared to variant 1. The encoded isoform (2) has a distinct C-terminus and is longer than isoform 1.
      Source sequence(s)
      AC159312
      Consensus CDS
      CCDS79107.1
      UniProtKB/TrEMBL
      A0A087WQY2
      Related
      ENSMUSP00000140390.2, ENSMUST00000190691.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      17054958..17061759 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036157628.1 → XP_036013521.1  uncharacterized protein C2orf50 homolog isoform X2

      Conserved Domains (1) summary
      pfam14945
      Location:53 → 81
      LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein

    2. XM_006515231.4 → XP_006515294.1  uncharacterized protein C2orf50 homolog isoform X1

      See identical proteins and their annotated locations for XP_006515294.1

      UniProtKB/TrEMBL
      D3Z430
      Conserved Domains (1) summary
      pfam14945
      Location:53 → 96
      LLC1; Normal lung function maintenance, Low in Lung Cancer 1 protein
    Nucleotide Protein Strain
    Heading Accession and Version

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