U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam43a family with sequence similarity 43, member A [ Mus musculus (house mouse) ]

    Gene ID: 224093, updated on 30-Apr-2024

    Summary

    Official Symbol
    Fam43aprovided by MGI
    Official Full Name
    family with sequence similarity 43, member Aprovided by MGI
    Primary source
    MGI:MGI:2676309
    See related
    Ensembl:ENSMUSG00000046546 AllianceGenome:MGI:2676309
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tuf1
    Summary
    Orthologous to human FAM43A (family with sequence similarity 43 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Fam43a in Genome Data Viewer
    Location:
    16 B2; 16 21.34 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (30418541..30421615)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (30599723..30602797)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 44 Neighboring gene STARR-seq mESC enhancer starr_40580 Neighboring gene predicted gene, 52252 Neighboring gene STARR-seq mESC enhancer starr_40581 Neighboring gene STARR-seq mESC enhancer starr_40582 Neighboring gene predicted gene, 53946 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:30587870-30588053 Neighboring gene large 60S subunit nuclear export GTPase 1 Neighboring gene STARR-positive B cell enhancer ABC_E5536 Neighboring gene STARR-seq mESC enhancer starr_40586 Neighboring gene STARR-positive B cell enhancer ABC_E9928 Neighboring gene predicted gene, 49754 Neighboring gene predicted gene, 33502

    Genomic regions, transcripts, and products

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    protein FAM43A
    Names
    somitovasculin

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177632.3NP_808300.1  protein FAM43A

      See identical proteins and their annotated locations for NP_808300.1

      Status: VALIDATED

      Source sequence(s)
      AK083036, BY428362
      Consensus CDS
      CCDS28103.1
      UniProtKB/Swiss-Prot
      A4FTY9, Q8BUP8, Q8R231
      UniProtKB/TrEMBL
      Q3UUV3
      Related
      ENSMUSP00000056555.4, ENSMUST00000059078.4
      Conserved Domains (1) summary
      pfam14719
      Location:69256
      PID_2; Phosphotyrosine interaction domain (PTB/PID)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      30418541..30421615
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)