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    Cp ceruloplasmin [ Mus musculus (house mouse) ]

    Gene ID: 12870, updated on 14-Apr-2024

    Summary

    Official Symbol
    Cpprovided by MGI
    Official Full Name
    ceruloplasminprovided by MGI
    Primary source
    MGI:MGI:88476
    See related
    Ensembl:ENSMUSG00000003617 AllianceGenome:MGI:88476
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D3Ertd555e
    Summary
    The protein encoded by this gene is a copper-containing glycoprotein found soluble in the serum and GPI-anchored in other tissues. It oxidizes Fe(II) to Fe(III) and is proposed to play an important role in iron homeostasis. In humans mutations of this gene cause aceruloplasminemia, which is characterized by retinal degeneration, diabetes, anemia and neurological symptoms. In mouse deficiency of this gene in combination with a deficiency of its homolog hephaestin causes retinal degeneration and serves as a pathophysiological model for aceruloplasminemia and age-related macular degeneration. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Jan 2013]
    Expression
    Biased expression in liver adult (RPKM 26.7), liver E18 (RPKM 23.8) and 8 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    Location:
    3 A2; 3 6.1 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (20011097..20063914)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (19956933..20009750)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 17771 Neighboring gene predicted gene, 42190 Neighboring gene STARR-seq mESC enhancer starr_07104 Neighboring gene HPS3, biogenesis of lysosomal organelles complex 2 subunit 1 Neighboring gene STARR-seq mESC enhancer starr_07105 Neighboring gene STARR-positive B cell enhancer ABC_E3428 Neighboring gene STARR-seq mESC enhancer starr_07106 Neighboring gene STARR-seq mESC enhancer starr_07107 Neighboring gene STARR-positive B cell enhancer ABC_E1018 Neighboring gene helicase-like transcription factor Neighboring gene STARR-seq mESC enhancer starr_07108 Neighboring gene VISTA enhancer mm86 Neighboring gene glycogenin 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables copper ion binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables copper ion binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ferroxidase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables ferroxidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables glutathione peroxidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables oxidoreductase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables oxidoreductase activity, acting on metal ions, oxygen as acceptor ISO
    Inferred from Sequence Orthology
    more info
     
    enables phospholipid-hydroperoxide glutathione peroxidase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein-folding chaperone binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within copper ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in intracellular copper ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in intracellular iron ion homeostasis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in iron ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within monoatomic ion transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in response to copper ion ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    located_in extracellular space HDA PubMed 
    located_in extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    ceruloplasmin
    Names
    cuproxidase ceruloplasmin
    ferroxidase
    ferroxidase ceruloplasmin
    NP_001263177.1
    NP_001263179.1
    NP_001361606.1
    NP_001396575.1
    NP_001396576.1
    NP_001396577.1
    NP_001396578.1
    NP_001396579.1
    NP_001396580.1
    NP_031778.2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276248.2NP_001263177.1  ceruloplasmin isoform c precursor

      See identical proteins and their annotated locations for NP_001263177.1

      Status: REVIEWED

      Source sequence(s)
      AC079442
      Consensus CDS
      CCDS71227.1
      UniProtKB/TrEMBL
      G3X8Q5
      Related
      ENSMUSP00000103964.2, ENSMUST00000108328.8
      Conserved Domains (5) summary
      cd04224
      Location:369566
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:726896
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:213353
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cd11022
      Location:569712
      CuRO_4_ceruloplasmin; The fourth cupredoxin domain of Ceruloplasmin
      cl19115
      Location:22201
      Cupredoxin; Cupredoxin superfamily
    2. NM_001276250.2NP_001263179.1  ceruloplasmin isoform c precursor

      See identical proteins and their annotated locations for NP_001263179.1

      Status: REVIEWED

      Source sequence(s)
      AC079442
      Consensus CDS
      CCDS71227.1
      UniProtKB/TrEMBL
      G3X8Q5
      Related
      ENSMUSP00000003714.7, ENSMUST00000003714.13
      Conserved Domains (5) summary
      cd04224
      Location:369566
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:726896
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:213353
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cd11022
      Location:569712
      CuRO_4_ceruloplasmin; The fourth cupredoxin domain of Ceruloplasmin
      cl19115
      Location:22201
      Cupredoxin; Cupredoxin superfamily
    3. NM_001374677.1NP_001361606.1  ceruloplasmin isoform d precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
      Consensus CDS
      CCDS89616.1
      UniProtKB/TrEMBL
      G3X9T8
      Related
      ENSMUSP00000103961.3, ENSMUST00000108325.9
      Conserved Domains (5) summary
      cd04224
      Location:369566
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:726896
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:213353
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cd11022
      Location:569712
      CuRO_4_ceruloplasmin; The fourth cupredoxin domain of Ceruloplasmin
      cl19115
      Location:22201
      Cupredoxin; Cupredoxin superfamily
    4. NM_001409646.1NP_001396575.1  ceruloplasmin isoform a precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
      UniProtKB/TrEMBL
      E9PZD8
      Related
      ENSMUSP00000103965.2, ENSMUST00000108329.8
    5. NM_001409647.1NP_001396576.1  ceruloplasmin isoform a precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
      UniProtKB/TrEMBL
      E9PZD8
    6. NM_001409648.1NP_001396577.1  ceruloplasmin isoform e precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
    7. NM_001409649.1NP_001396578.1  ceruloplasmin isoform f precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
    8. NM_001409650.1NP_001396579.1  ceruloplasmin isoform g precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
    9. NM_001409651.1NP_001396580.1  ceruloplasmin isoform h precursor

      Status: REVIEWED

      Source sequence(s)
      AC079442
    10. NM_007752.4NP_031778.2  ceruloplasmin isoform b precursor

      See identical proteins and their annotated locations for NP_031778.2

      Status: REVIEWED

      Source sequence(s)
      AC079442
      Consensus CDS
      CCDS38401.1
      UniProtKB/Swiss-Prot
      Q61147, Q6P5C8
      Related
      ENSMUSP00000088857.6, ENSMUST00000091309.12
      Conserved Domains (5) summary
      cd04224
      Location:369567
      CuRO_3_ceruloplasmin; The third cupredoxin domain of Ceruloplasmin
      cd04225
      Location:727897
      CuRO_5_ceruloplasmin; The fifth cupredoxin domain of Ceruloplasmin
      cd11021
      Location:213353
      CuRO_2_ceruloplasmin; The second cupredoxin domain of Ceruloplasmin
      cd11022
      Location:570713
      CuRO_4_ceruloplasmin; The fourth cupredoxin domain of Ceruloplasmin
      cl19115
      Location:22201
      Cupredoxin; Cupredoxin superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      20011097..20063914
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_004941272.1 RNA Sequence

    2. XR_004941273.1 RNA Sequence

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001042611.1: Suppressed sequence

      Description
      NM_001042611.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.